Resource
| Id | Histone_ChIP-seq/ENCSR566VBK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR566VBK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (81 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN301KOP|/analyses/ENCAN301KOP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF338MUY|/files/ENCFF338MUY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 31916960 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR566VBK | float |
Histone_ChIP-seq_ENCSR566VBK |
Histone_ChIP-seq ENCSR566VBK [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K27me3"]
|
 |
[1.78, 16.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47008459 | 1.46% | 76064 |
| chr1 | 4818516 | 1.94% | 7471 |
| chr2 | 2638236 | 1.09% | 4208 |
| chr3 | 1403982 | 0.71% | 2327 |
| chr4 | 1418325 | 0.75% | 2041 |
| chr5 | 1876858 | 1.03% | 2773 |
| chr6 | 1956707 | 1.15% | 3000 |
| chr7 | 1830524 | 1.15% | 2784 |
| chr8 | 1798141 | 1.24% | 2759 |
| chr9 | 1882793 | 1.36% | 2771 |
| chr10 | 2112842 | 1.58% | 3284 |
| chr11 | 2250022 | 1.67% | 3684 |
| chr12 | 1980393 | 1.49% | 3126 |
| chr13 | 902077 | 0.79% | 1424 |
| chr14 | 1256937 | 1.17% | 2085 |
| chr15 | 1266780 | 1.24% | 2082 |
| chr16 | 1730141 | 1.92% | 2741 |
| chr17 | 2841981 | 3.41% | 4175 |
| chr18 | 564467 | 0.70% | 977 |
| chr19 | 2415333 | 4.12% | 3665 |
| chr20 | 2319513 | 3.60% | 3576 |
| chr21 | 530253 | 1.14% | 855 |
| chr22 | 1591379 | 3.13% | 2592 |
| chrX | 5622259 | 3.60% | 11664 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76064 | 160 | 12410 | 618.01 | 459 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF360REA.bed.gz | 1.47 MB | d8948f3303e3256dabe386bdf1b062c4 |
| ENCFF360REA.tabix.bed.gz | 750.34 KB | 7a4e6b8e2e89e76566089b6020f54150 |
| ENCFF360REA.tabix.bed.gz.tbi | 192.83 KB | 64a5677a413eb9daf876ce76238079e1 |
| genomic_resource.yaml | 2.18 KB | 48ba807d0e518b3377e528e45c43bc0e |
| statistics/ |