Resource

Id Histone_ChIP-seq/ENCSR564VIXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR564VIX [biosample_summary="Homo sapiens DND-41" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR564VIX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007074/
  • biosample_summary: Homo sapiens DND-41
  • date_created: 2014-10-24T16:19:48.477171+00:00
  • date_released: 2016-11-16
  • doi: 10.17989/ENCSR564VIX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR564VIX float

Histone_ChIP-seq_ENCSR564VIX
Histone_ChIP-seq ENCSR564VIX [biosample_summary="Homo sapiens DND-41" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR564VIX [1.54, 29.6]
n
21,666,797
mean
11.1
sd
4.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216667970.67% 17591
chr1 2185011 0.88% 1732
chr2 1532864 0.63% 1205
chr3 1281793 0.65% 977
chr4 865048 0.45% 669
chr5 1024763 0.56% 757
chr6 1274017 0.75% 997
chr7 1014213 0.64% 837
chr8 726879 0.50% 599
chr9 768485 0.56% 644
chr10 892605 0.67% 716
chr11 1122326 0.83% 893
chr12 1174417 0.88% 933
chr13 463704 0.41% 372
chr14 772936 0.72% 612
chr15 653342 0.64% 563
chr16 875774 0.97% 739
chr17 1244464 1.49% 1074
chr17_GL000205v2_random 1141 0.61% 2
chr18 341869 0.43% 284
chr19 1449611 2.47% 1303
chr20 547381 0.85% 443
chr21 230300 0.49% 191
chr22 493812 0.97% 413
chrUn_GL000219v1 1977 1.10% 2
chrUn_KI270466v1 491 39.82% 1
chrUn_KI270467v1 1137 29.01% 2
chrUn_KI270746v1 292 0.44% 1
chrUn_KI270750v1 247 0.17% 1
chrX 691193 0.44% 607
chrY 34705 0.06% 22
3336 contigs with no values (128491807 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17591 190 10215 1231.7 1079
global segment-length histogram

Files

Filename Size md5
ENCFF569KYP.bed.gz 479.95 KB e10529ed40183cf5bccdca8dcc950244
ENCFF569KYP.tabix.bed.gz 203.73 KB 078125f334465d25dbf295e599e3acdc
ENCFF569KYP.tabix.bed.gz.tbi 104.41 KB 9fca56e41ff2e737b1e1e33cc6fb91f9
genomic_resource.yaml 1.36 KB 9070c84931cd1f985927de7b665d4b47
statistics/