Resource

Id Histone_ChIP-seq/ENCSR563YGFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR563YGF [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR563YGF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002107/
  • biosample_summary: Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)
  • date_created: 2015-10-01T07:17:29.757773+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR563YGF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (32 years) with nonobstructive coronary artery disease
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR563YGF float

Histone_ChIP-seq_ENCSR563YGF
Histone_ChIP-seq ENCSR563YGF [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR563YGF [1.49, 11.6]
n
8,787,474
mean
4.26
sd
1.23

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87874740.27% 31226
chr1 489273 0.20% 1871
chr1_KI270708v1_random 158 0.12% 1
chr1_KI270709v1_random 2404 3.60% 2
chr1_KI270712v1_random 181 0.10% 1
chr2 464483 0.19% 1837
chr2_KI270716v1_random 1032 0.67% 4
chr3 411543 0.21% 1606
chr4 444059 0.23% 1708
chr4_GL000008v2_random 4025 1.92% 3
chr5 623357 0.34% 2197
chr6 350335 0.21% 1389
chr7 546508 0.34% 1979
chr8 350865 0.24% 1357
chr9 270822 0.20% 1011
chr9_KI270719v1_random 1334 0.75% 4
chr10 372687 0.28% 1434
chr11 276864 0.20% 1065
chr12 411362 0.31% 1482
chr13 185554 0.16% 760
chr14 164304 0.15% 663
chr14_GL000225v1_random 3748 1.77% 13
chr14_KI270722v1_random 816 0.42% 4
chr14_KI270723v1_random 334 0.88% 1
chr14_KI270725v1_random 526 0.30% 2
chr15 201931 0.20% 717
chr16 269102 0.30% 935
chr16_KI270728v1_random 343 0.02% 2
chr17 176177 0.21% 639
chr17_GL000205v2_random 1124 0.61% 5
chr17_KI270729v1_random 13659 4.86% 35
chr17_KI270730v1_random 9127 8.11% 26
chr18 149495 0.19% 591
chr19 1986202 3.39% 5834
chr20 164283 0.25% 602
chr21 144049 0.31% 466
chr22 63419 0.12% 245
chr22_KI270732v1_random 1631 3.93% 2
chr22_KI270733v1_random 764 0.42% 3
chr22_KI270735v1_random 2856 6.67% 5
chr22_KI270736v1_random 45568 25.05% 121
chr22_KI270738v1_random 2023 2.04% 9
chrUn_GL000216v2 18377 10.41% 55
chrUn_GL000219v1 1232 0.69% 5
chrUn_GL000224v1 5216 2.90% 13
chrUn_KI270435v1 809 0.87% 2
chrUn_KI270438v1 12965 11.52% 40
chrUn_KI270442v1 37387 9.54% 100
chrUn_KI270448v1 184 2.30% 1
chrUn_KI270468v1 216 5.33% 1
chrUn_KI270515v1 145 2.28% 1
chrUn_KI270517v1 165 5.07% 1
chrUn_KI270519v1 1751 1.27% 5
chrUn_KI270538v1 632 0.69% 3
chrUn_KI270589v1 1779 4.00% 3
chrUn_KI270590v1 548 11.70% 3
chrUn_KI270591v1 404 6.97% 2
chrUn_KI270744v1 186 0.11% 1
chrUn_KI270747v1 188 0.09% 1
chrUn_KI270749v1 1705 1.07% 5
chrUn_KI270750v1 299 0.20% 1
chrUn_KI270751v1 1153 0.76% 3
chrUn_KI270754v1 202 0.50% 1
chrUn_KI270756v1 1075 1.35% 4
chrUn_KI270757v1 1930 2.71% 4
chrX 40176 0.03% 163
chrY 50423 0.09% 177
3300 contigs with no values (122097149 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31226 125 3665 281.42 228
global segment-length histogram

Files

Filename Size md5
ENCFF199BLM.bed.gz 573.92 KB 9389e4a23107c7851107426d72b518a2
ENCFF199BLM.tabix.bed.gz 296.53 KB d2258d60d107ea82d32ff9147618a6c2
ENCFF199BLM.tabix.bed.gz.tbi 147.92 KB 21a49222f9367a518fcf0b0efbb32e11
genomic_resource.yaml 1.71 KB 90855a27acfbed32679ca6ac350476a9
statistics/