Resource
| Id | Histone_ChIP-seq/ENCSR560XLD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR560XLD [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN055SMD|/analyses/ENCAN055SMD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF854SIK|/files/ENCFF854SIK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF854SIK|/files/ENCFF854SIK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR560XLD | float |
Histone_ChIP-seq_ENCSR560XLD |
Histone_ChIP-seq ENCSR560XLD [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)" and target="H3K4me3"]
|
 |
[1.84, 83.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57227543 | 1.78% | 33376 |
| chr1 | 5785139 | 2.32% | 3330 |
| chr2 | 3910149 | 1.61% | 2299 |
| chr3 | 3226829 | 1.63% | 1863 |
| chr4 | 2263996 | 1.19% | 1307 |
| chr5 | 2725666 | 1.50% | 1535 |
| chr6 | 3343326 | 1.96% | 1867 |
| chr7 | 2765316 | 1.74% | 1660 |
| chr8 | 2121086 | 1.46% | 1271 |
| chr9 | 2379904 | 1.72% | 1423 |
| chr10 | 2482330 | 1.86% | 1504 |
| chr11 | 3047094 | 2.26% | 1667 |
| chr12 | 3100575 | 2.33% | 1714 |
| chr13 | 1209556 | 1.06% | 753 |
| chr14 | 1866901 | 1.74% | 1077 |
| chr15 | 1853321 | 1.82% | 1076 |
| chr16 | 2218485 | 2.46% | 1343 |
| chr17 | 3339535 | 4.01% | 1896 |
| chr18 | 986021 | 1.23% | 605 |
| chr19 | 3547923 | 6.05% | 2153 |
| chr20 | 1489642 | 2.31% | 901 |
| chr21 | 615640 | 1.32% | 377 |
| chr22 | 1299632 | 2.56% | 772 |
| chrX | 1649477 | 1.06% | 983 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33376 | 205 | 19350 | 1714.63 | 1268 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF506RLO.bed.gz | 861.65 KB | 76e1546decc438379b5d97a13fbe456c |
| ENCFF506RLO.tabix.bed.gz | 378.9 KB | 48624ed9813ff281cb89a93abc823e42 |
| ENCFF506RLO.tabix.bed.gz.tbi | 187.76 KB | 2fa49062866c3cdb5319a8382f5e286b |
| genomic_resource.yaml | 2.8 KB | eea84b5acea5be48a3bcab52733ce014 |
| statistics/ |