Resource

Id Histone_ChIP-seq/ENCSR560OUFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR560OUF [biosample_summary="Homo sapiens HUES48" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR560OUF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007083/
  • biosample_summary: Homo sapiens HUES48
  • date_created: 2015-09-15T19:51:23.394028+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR560OUF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR560OUF float

Histone_ChIP-seq_ENCSR560OUF
Histone_ChIP-seq ENCSR560OUF [biosample_summary="Homo sapiens HUES48" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR560OUF [1.9, 25.6]
n
82,152,735
mean
5.97
sd
2.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 821527352.55% 113174
chr1 4572941 1.84% 6020
chr1_KI270708v1_random 530 0.42% 1
chr1_KI270709v1_random 12619 18.87% 21
chr2 3370156 1.39% 5539
chr2_KI270716v1_random 7313 4.75% 7
chr3 2580603 1.30% 4346
chr4 3226937 1.70% 5193
chr4_GL000008v2_random 4391 2.09% 1
chr5 3484661 1.92% 5016
chr5_GL000208v1_random 17304 18.67% 20
chr6 2523018 1.48% 4044
chr7 4619070 2.90% 6172
chr8 4002783 2.76% 4620
chr9 1778482 1.29% 2781
chr9_KI270718v1_random 333 0.88% 1
chr9_KI270719v1_random 6438 3.64% 18
chr9_KI270720v1_random 3496 8.95% 5
chr10 3790385 2.83% 4514
chr11 3583999 2.65% 4555
chr12 3028607 2.27% 4104
chr13 1613716 1.41% 2403
chr14 2340341 2.19% 2958
chr14_GL000009v2_random 321 0.16% 1
chr14_GL000194v1_random 876 0.46% 2
chr14_GL000225v1_random 110085 52.13% 75
chr14_KI270722v1_random 21033 10.84% 24
chr14_KI270723v1_random 1165 3.06% 3
chr14_KI270724v1_random 3095 7.82% 5
chr14_KI270725v1_random 5520 3.19% 14
chr15 1670869 1.64% 2623
chr16 2078589 2.30% 2258
chr16_KI270728v1_random 20260 1.08% 30
chr17 1561754 1.88% 2063
chr17_GL000205v2_random 68090 36.69% 19
chr17_KI270729v1_random 101076 35.99% 87
chr17_KI270730v1_random 21225 18.86% 20
chr18 1184519 1.47% 1952
chr19 7271265 12.40% 7797
chr20 1634016 2.54% 2001
chr21 1024531 2.19% 1547
chr22 996312 1.96% 1098
chr22_KI270732v1_random 7003 16.86% 13
chr22_KI270733v1_random 989 0.55% 4
chr22_KI270735v1_random 11757 27.46% 22
chr22_KI270736v1_random 148407 81.58% 51
chr22_KI270737v1_random 1193 1.15% 3
chr22_KI270738v1_random 41581 41.84% 42
chrUn_GL000214v1 1095 0.80% 3
chrUn_GL000216v2 70442 39.89% 21
chrUn_GL000218v1 1854 1.15% 5
chrUn_GL000219v1 23090 12.89% 28
chrUn_GL000224v1 16669 9.28% 28
chrUn_KI270320v1 313 7.09% 1
chrUn_KI270333v1 1975 73.18% 3
chrUn_KI270336v1 256 24.95% 1
chrUn_KI270337v1 762 67.98% 2
chrUn_KI270417v1 834 40.82% 1
chrUn_KI270420v1 248 10.69% 1
chrUn_KI270429v1 727 53.42% 1
chrUn_KI270435v1 8472 9.11% 11
chrUn_KI270438v1 52652 46.80% 49
chrUn_KI270442v1 153641 39.19% 141
chrUn_KI270448v1 3551 44.43% 3
chrUn_KI270465v1 366 20.63% 1
chrUn_KI270466v1 1053 85.40% 1
chrUn_KI270467v1 2540 64.80% 3
chrUn_KI270468v1 1895 46.73% 1
chrUn_KI270507v1 2818 52.64% 6
chrUn_KI270508v1 540 27.68% 2
chrUn_KI270509v1 946 40.81% 2
chrUn_KI270510v1 416 17.23% 1
chrUn_KI270511v1 4374 53.82% 4
chrUn_KI270512v1 3007 13.25% 4
chrUn_KI270515v1 3299 51.86% 4
chrUn_KI270516v1 856 65.85% 1
chrUn_KI270517v1 1565 48.11% 2
chrUn_KI270519v1 22882 16.57% 34
chrUn_KI270521v1 1090 14.26% 2
chrUn_KI270522v1 1742 30.70% 2
chrUn_KI270538v1 24584 26.92% 24
chrUn_KI270584v1 3277 72.61% 2
chrUn_KI270587v1 1517 51.09% 1
chrUn_KI270588v1 587 9.53% 2
chrUn_KI270589v1 3354 7.54% 2
chrUn_KI270590v1 2066 44.10% 3
chrUn_KI270591v1 1702 29.37% 3
chrUn_KI270593v1 896 29.46% 2
chrUn_KI270741v1 332 0.21% 1
chrUn_KI270742v1 1382 0.74% 5
chrUn_KI270743v1 241 0.11% 1
chrUn_KI270744v1 23788 14.12% 44
chrUn_KI270746v1 10512 15.81% 15
chrUn_KI270747v1 990 0.50% 2
chrUn_KI270749v1 2445 1.54% 5
chrUn_KI270750v1 27519 18.49% 24
chrUn_KI270751v1 11128 7.38% 26
chrUn_KI270753v1 754 1.20% 2
chrUn_KI270754v1 611 1.52% 2
chrUn_KI270756v1 9006 11.32% 5
chrUn_KI270757v1 11372 15.96% 16
chrX 19034004 12.20% 28475
chrY 41044 0.07% 50
3264 contigs with no values (120487640 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113174 165 36656 725.9 514
global segment-length histogram

Files

Filename Size md5
ENCFF554NKA.bed.gz 2.0 MB 8c6422d546f9ce96fb15a868d729a677
ENCFF554NKA.tabix.bed.gz 1.03 MB e9523cf6f1a73def718e1448ff5aa764
ENCFF554NKA.tabix.bed.gz.tbi 273.07 KB 129c986d646cc3e6212ad63470e5be22
genomic_resource.yaml 2.38 KB b2d0007949ae0573ea64d81b4508a98a
statistics/