Resource

Id Histone_ChIP-seq/ENCSR560BELcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR560BEL [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue female adult (48 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR560BEL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue female adult (48 years)
  • date_created: 2020-07-02T16:48:05.219426+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR560BEL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (48 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR560BEL float

Histone_ChIP-seq_ENCSR560BEL
Histone_ChIP-seq ENCSR560BEL [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue female adult (48 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR560BEL [1.76, 68.2]
n
83,476,019
mean
10.9
sd
8.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 834760192.59% 64040
chr1 8424090 3.38% 6243
chr2 6759268 2.79% 5335
chr3 5278130 2.66% 4155
chr4 2863562 1.51% 2434
chr5 4063849 2.24% 3286
chr6 4729478 2.77% 3778
chr7 3779203 2.37% 2928
chr8 3315858 2.28% 2773
chr9 3832196 2.77% 2862
chr10 4143682 3.10% 3216
chr11 4457227 3.30% 3303
chr12 4460570 3.35% 3234
chr13 1836896 1.61% 1510
chr14 2815344 2.63% 2117
chr15 2886557 2.83% 2229
chr16 3085747 3.42% 2342
chr17 4667859 5.61% 3277
chr18 1751167 2.18% 1383
chr19 3647265 6.22% 2524
chr20 2335722 3.62% 1759
chr21 1165418 2.50% 873
chr22 1918619 3.78% 1378
chrX 1258312 0.81% 1101
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64040 235 31189 1303.5 931
global segment-length histogram

Files

Filename Size md5
ENCFF987KRH.bed.gz 1.48 MB 63af33ae7e21467eb683f1ca328f2b19
ENCFF987KRH.tabix.bed.gz 690.96 KB 9733ac027fff74ec370fd254f737ad0e
ENCFF987KRH.tabix.bed.gz.tbi 232.93 KB fabfa96ae6e155f2af841ae86d9b8b82
genomic_resource.yaml 1.87 KB fafdf5f4cb2635a3f08954f74b78f650
statistics/