Resource
| Id | Histone_ChIP-seq/ENCSR559RGT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR559RGT [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (81 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN997XSB|/analyses/ENCAN997XSB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF551SLY|/files/ENCFF551SLY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26105481 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR559RGT | float |
Histone_ChIP-seq_ENCSR559RGT |
Histone_ChIP-seq ENCSR559RGT [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (81 years)" and target="H3K36me3"]
|
 |
[1.81, 33.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 145247976 | 4.51% | 145564 |
| chr1 | 13885312 | 5.58% | 13425 |
| chr1_KI270711v1_random | 543 | 1.29% | 1 |
| chr2 | 11067836 | 4.57% | 11790 |
| chr3 | 9145854 | 4.61% | 9649 |
| chr4 | 5609631 | 2.95% | 6245 |
| chr5 | 7049724 | 3.88% | 7564 |
| chr6 | 6640332 | 3.89% | 7180 |
| chr7 | 6699602 | 4.20% | 7073 |
| chr8 | 5095108 | 3.51% | 5528 |
| chr9 | 6710758 | 4.85% | 6445 |
| chr10 | 6709946 | 5.02% | 6943 |
| chr11 | 7571760 | 5.61% | 7015 |
| chr12 | 7781843 | 5.84% | 7587 |
| chr13 | 3100398 | 2.71% | 3597 |
| chr14 | 5090085 | 4.76% | 5146 |
| chr14_GL000194v1_random | 937 | 0.49% | 3 |
| chr15 | 5358130 | 5.25% | 5398 |
| chr16 | 6642541 | 7.35% | 5792 |
| chr17 | 8081449 | 9.71% | 7411 |
| chr18 | 2531173 | 3.15% | 2953 |
| chr19 | 7770852 | 13.26% | 6794 |
| chr20 | 4546868 | 7.06% | 4108 |
| chr21 | 1809096 | 3.87% | 1664 |
| chr22 | 3944546 | 7.76% | 3322 |
| chrUn_GL000219v1 | 2087 | 1.16% | 6 |
| chrX | 2401565 | 1.54% | 2925 |
| 3340 contigs with no values (185891623 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 145564 | 175 | 32088 | 997.83 | 663 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF603ZCB.bed.gz | 3.03 MB | 36b6b6076d2f3b842a2ef5229e0068db |
| ENCFF603ZCB.tabix.bed.gz | 1.43 MB | e31a997e6a2764eeb0fe9e49940d33cf |
| ENCFF603ZCB.tabix.bed.gz.tbi | 178.98 KB | ab42508fef57602bdd0e40c7cb8737dc |
| genomic_resource.yaml | 2.17 KB | ef28fc2b48909365e7c29fee4adab432 |
| statistics/ |