Resource

Id Histone_ChIP-seq/ENCSR559CSJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR559CSJ [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR559CSJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:08.468774+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR559CSJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment: ENCODE4 pipeline run failed for this experiment, but the ENCODE3 pipeline run is available for use.
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR559CSJ float

Histone_ChIP-seq_ENCSR559CSJ
Histone_ChIP-seq ENCSR559CSJ [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR559CSJ [1.82, 18.5]
n
71,241,515
mean
6.05
sd
2.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 712415152.21% 83214
chr1 7472004 3.00% 8366
chr2 5733414 2.37% 6683
chr3 4484605 2.26% 5546
chr4 2801293 1.47% 3585
chr5 3875511 2.13% 4669
chr6 3950518 2.31% 4797
chr7 3404058 2.14% 4214
chr8 2708743 1.87% 3380
chr9 3685106 2.66% 4196
chr10 4104813 3.07% 4484
chr11 4564006 3.38% 5114
chr12 3012847 2.26% 3569
chr13 1687903 1.48% 2124
chr14 2531452 2.36% 2891
chr15 2627279 2.58% 3016
chr16 2408701 2.67% 2789
chr17 3575946 4.30% 3837
chr18 1504899 1.87% 1851
chr19 2157055 3.68% 2437
chr20 2126613 3.30% 2343
chr21 779643 1.67% 965
chr22 1550163 3.05% 1643
chrX 481512 0.31% 693
chrY 13431 0.02% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83214 270 18606 856.12 678
global segment-length histogram

Files

Filename Size md5
ENCFF214WMR.bed.gz 1.62 MB 321f70cfb759a32e41385c50674025a9
ENCFF214WMR.tabix.bed.gz 829.41 KB b5432d1b1577ee1f0162f898e25a2c5a
ENCFF214WMR.tabix.bed.gz.tbi 266.55 KB 74f2b5703bbb76791cbe7dc6013fc778
genomic_resource.yaml 2.1 KB c54257306f96bbe02ffe35a31a916888
statistics/