Resource
| Id | Histone_ChIP-seq/ENCSR559BMF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR559BMF [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN328QOG|/analyses/ENCAN328QOG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF418VCT|/files/ENCFF418VCT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 24628265 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR559BMF | float |
Histone_ChIP-seq_ENCSR559BMF |
Histone_ChIP-seq ENCSR559BMF [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K36me3"]
|
 |
[1.9, 23.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 106928447 | 3.32% | 185628 |
| chr1 | 10567885 | 4.24% | 18142 |
| chr2 | 7084124 | 2.92% | 14166 |
| chr3 | 6148263 | 3.10% | 11520 |
| chr4 | 3751668 | 1.97% | 7707 |
| chr5 | 4877169 | 2.69% | 9290 |
| chr6 | 4150705 | 2.43% | 8128 |
| chr7 | 5129253 | 3.22% | 9108 |
| chr8 | 3660398 | 2.52% | 7038 |
| chr9 | 4734793 | 3.42% | 7827 |
| chr10 | 4373968 | 3.27% | 8197 |
| chr11 | 5773547 | 4.27% | 9404 |
| chr12 | 5998682 | 4.50% | 10184 |
| chr13 | 1857507 | 1.62% | 3981 |
| chr14 | 3398934 | 3.18% | 6292 |
| chr15 | 3694852 | 3.62% | 7080 |
| chr16 | 5636441 | 6.24% | 8336 |
| chr17 | 6964783 | 8.37% | 10878 |
| chr18 | 1638177 | 2.04% | 3418 |
| chr19 | 7882757 | 13.45% | 9600 |
| chr20 | 3457407 | 5.36% | 5394 |
| chr21 | 1398180 | 2.99% | 2136 |
| chr22 | 3545564 | 6.98% | 4914 |
| chrX | 1120050 | 0.72% | 2672 |
| chrY | 83340 | 0.15% | 216 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 185628 | 145 | 30600 | 576.04 | 376 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF432RNY.bed.gz | 3.37 MB | 791eb1684ab21a2f29f3635e0f887f36 |
| ENCFF432RNY.tabix.bed.gz | 1.73 MB | 35d480e7712f16aab08d155a79c0eccb |
| ENCFF432RNY.tabix.bed.gz.tbi | 203.45 KB | 91a9dfeb6586c948296f3d01398b8d17 |
| genomic_resource.yaml | 1.97 KB | 1583d8c62a55881b46788f8b676219dd |
| statistics/ |