Resource
| Id | Histone_ChIP-seq/ENCSR557OPY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR557OPY [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN980FMV|/analyses/ENCAN980FMV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF892PZE|/files/ENCFF892PZE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17207926 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR557OPY | float |
Histone_ChIP-seq_ENCSR557OPY |
Histone_ChIP-seq ENCSR557OPY [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (33 years)" and target="H3K36me3"]
|
 |
[1.9, 18] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 102439232 | 3.18% | 152268 |
| chr1 | 10396569 | 4.18% | 15335 |
| chr2 | 7160097 | 2.96% | 11909 |
| chr3 | 6420624 | 3.24% | 10057 |
| chr4 | 3586626 | 1.89% | 6105 |
| chr5 | 4687758 | 2.58% | 7538 |
| chr6 | 4274355 | 2.50% | 6963 |
| chr7 | 4846836 | 3.04% | 7407 |
| chr8 | 3356491 | 2.31% | 5575 |
| chr9 | 4504484 | 3.25% | 6518 |
| chr10 | 4377275 | 3.27% | 6837 |
| chr11 | 5877192 | 4.35% | 8086 |
| chr12 | 5806990 | 4.36% | 8351 |
| chr13 | 1653642 | 1.45% | 3007 |
| chr14 | 3362603 | 3.14% | 5168 |
| chr15 | 3486995 | 3.42% | 5582 |
| chr16 | 5128035 | 5.68% | 6633 |
| chr17 | 6137939 | 7.37% | 8289 |
| chr18 | 1738363 | 2.16% | 3017 |
| chr19 | 6951369 | 11.86% | 7799 |
| chr20 | 3322236 | 5.16% | 4742 |
| chr21 | 1339862 | 2.87% | 1828 |
| chr22 | 3193313 | 6.28% | 3965 |
| chrX | 829578 | 0.53% | 1557 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 152268 | 140 | 13874 | 672.76 | 493 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF513HZH.bed.gz | 2.66 MB | 49897a8337e5e1d9d24289786227768e |
| ENCFF513HZH.tabix.bed.gz | 1.38 MB | f28e37f0f5b487186f2d80cffe71f243 |
| ENCFF513HZH.tabix.bed.gz.tbi | 201.31 KB | 290b80340e8f4b2b0d4eb1d3f6bb4d36 |
| genomic_resource.yaml | 2.06 KB | 7ed2527c5411686f2063cd1eb87e1706 |
| statistics/ |