Resource
| Id | Histone_ChIP-seq/ENCSR555TAX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR555TAX [biosample_summary="Homo sapiens PC-9" and target="H3K9me3"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN481HDS|/analyses/ENCAN481HDS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF864KKX|/files/ENCFF864KKX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 22317935 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF701EBF|/files/ENCFF701EBF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 40369363 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR555TAX | float |
Histone_ChIP-seq_ENCSR555TAX |
Histone_ChIP-seq ENCSR555TAX [biosample_summary="Homo sapiens PC-9" and target="H3K9me3"]
|
 |
[1.5, 7.69] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30399782 | 0.94% | 53636 |
| chr1 | 2482140 | 1.00% | 4671 |
| chr1_KI270709v1_random | 2295 | 3.43% | 3 |
| chr1_KI270712v1_random | 278 | 0.16% | 1 |
| chr2 | 2802735 | 1.16% | 5001 |
| chr2_KI270716v1_random | 6904 | 4.49% | 6 |
| chr3 | 2330496 | 1.18% | 4337 |
| chr4 | 748091 | 0.39% | 1502 |
| chr4_GL000008v2_random | 3952 | 1.88% | 3 |
| chr5 | 2095412 | 1.15% | 4023 |
| chr5_GL000208v1_random | 642 | 0.69% | 1 |
| chr6 | 1785433 | 1.05% | 3491 |
| chr7 | 2684726 | 1.68% | 4643 |
| chr8 | 1187477 | 0.82% | 2150 |
| chr9 | 925983 | 0.67% | 1759 |
| chr10 | 808573 | 0.60% | 1456 |
| chr11 | 1364457 | 1.01% | 2549 |
| chr12 | 1652278 | 1.24% | 3162 |
| chr13 | 865312 | 0.76% | 1781 |
| chr14 | 698902 | 0.65% | 1256 |
| chr14_GL000225v1_random | 3951 | 1.87% | 4 |
| chr14_KI270722v1_random | 259 | 0.13% | 1 |
| chr15 | 368984 | 0.36% | 714 |
| chr16 | 799599 | 0.89% | 1155 |
| chr16_KI270728v1_random | 1059 | 0.06% | 3 |
| chr17 | 685887 | 0.82% | 1107 |
| chr17_KI270729v1_random | 93692 | 33.36% | 80 |
| chr17_KI270730v1_random | 8477 | 7.53% | 13 |
| chr18 | 570838 | 0.71% | 1128 |
| chr19 | 3651913 | 6.23% | 4552 |
| chr20 | 643720 | 1.00% | 1144 |
| chr21 | 221386 | 0.47% | 297 |
| chr22 | 270382 | 0.53% | 430 |
| chr22_KI270733v1_random | 1009 | 0.56% | 3 |
| chr22_KI270735v1_random | 2454 | 5.73% | 4 |
| chr22_KI270736v1_random | 1686 | 0.93% | 3 |
| chr22_KI270738v1_random | 14490 | 14.58% | 23 |
| chrUn_GL000216v2 | 8513 | 4.82% | 10 |
| chrUn_GL000219v1 | 2871 | 1.60% | 7 |
| chrUn_GL000224v1 | 10228 | 5.69% | 9 |
| chrUn_KI270322v1 | 374 | 1.74% | 1 |
| chrUn_KI270424v1 | 296 | 13.83% | 1 |
| chrUn_KI270429v1 | 460 | 33.80% | 1 |
| chrUn_KI270435v1 | 3773 | 4.06% | 9 |
| chrUn_KI270438v1 | 41207 | 36.63% | 40 |
| chrUn_KI270442v1 | 63523 | 16.20% | 68 |
| chrUn_KI270465v1 | 373 | 21.03% | 1 |
| chrUn_KI270467v1 | 1199 | 30.59% | 2 |
| chrUn_KI270468v1 | 781 | 19.26% | 2 |
| chrUn_KI270507v1 | 241 | 4.50% | 1 |
| chrUn_KI270508v1 | 420 | 21.53% | 1 |
| chrUn_KI270512v1 | 932 | 4.11% | 2 |
| chrUn_KI270519v1 | 3620 | 2.62% | 7 |
| chrUn_KI270522v1 | 571 | 10.06% | 1 |
| chrUn_KI270538v1 | 2009 | 2.20% | 6 |
| chrUn_KI270588v1 | 435 | 7.06% | 1 |
| chrUn_KI270589v1 | 2354 | 5.29% | 2 |
| chrUn_KI270591v1 | 615 | 10.61% | 2 |
| chrUn_KI270742v1 | 282 | 0.15% | 1 |
| chrUn_KI270747v1 | 865 | 0.44% | 1 |
| chrUn_KI270750v1 | 278 | 0.19% | 1 |
| chrUn_KI270751v1 | 556 | 0.37% | 1 |
| chrUn_KI270756v1 | 2034 | 2.56% | 3 |
| chrUn_KI270757v1 | 2272 | 3.19% | 4 |
| chrX | 455709 | 0.29% | 983 |
| chrY | 7119 | 0.01% | 12 |
| 3301 contigs with no values (122877524 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53636 | 180 | 14517 | 566.78 | 439 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF813YSM.bed.gz | 1.18 MB | 0b2921d6fb9177b0b39d8b0848b0e771 |
| ENCFF813YSM.tabix.bed.gz | 558.83 KB | 529996105adbd7f5b58d3c451b58259b |
| ENCFF813YSM.tabix.bed.gz.tbi | 230.97 KB | b9a2a452c8c9d91f6b0be04edd0939c7 |
| genomic_resource.yaml | 2.36 KB | 6cfe7fc5788990d0df72b1d34671a628 |
| statistics/ |