Resource

Id Histone_ChIP-seq/ENCSR554RQQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR554RQQ [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR554RQQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue male adult (54 years)
  • date_created: 2016-03-19T00:38:18.532811+00:00
  • date_released: 2016-10-24
  • doi: 10.17989/ENCSR554RQQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment: The lab has submitted new control fastqs, prompting new peak and signal calls for its downstream experiments.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR554RQQ float

Histone_ChIP-seq_ENCSR554RQQ
Histone_ChIP-seq ENCSR554RQQ [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR554RQQ [1.33, 18.9]
n
25,517,424
mean
8.65
sd
3.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 255174240.79% 18752
chr1 2502843 1.01% 1818
chr1_KI270712v1_random 704 0.40% 1
chr2 1784803 0.74% 1277
chr3 1490068 0.75% 1071
chr4 1071623 0.56% 725
chr5 1198152 0.66% 832
chr6 1478948 0.87% 1066
chr7 1252062 0.79% 932
chr8 980482 0.68% 689
chr9 1061075 0.77% 782
chr10 1128970 0.84% 822
chr11 1377753 1.02% 994
chr12 1324491 0.99% 939
chr13 539877 0.47% 376
chr14 874038 0.82% 648
chr14_GL000225v1_random 1127 0.53% 3
chr15 861893 0.85% 613
chr16 1021737 1.13% 782
chr17 1413848 1.70% 1071
chr17_GL000205v2_random 2409 1.30% 2
chr17_KI270729v1_random 1100 0.39% 2
chr18 428348 0.53% 316
chr19 1593251 2.72% 1311
chr20 637206 0.99% 470
chr21 232339 0.50% 170
chr22 529340 1.04% 419
chr22_KI270733v1_random 1136 0.63% 2
chrM 8812 53.18% 6
chrUn_GL000195v1 391 0.21% 1
chrUn_GL000216v2 256 0.14% 1
chrUn_GL000218v1 316 0.20% 1
chrUn_GL000219v1 1675 0.93% 2
chrUn_KI270337v1 705 62.89% 1
chrUn_KI270438v1 5497 4.89% 9
chrUn_KI270466v1 1054 85.48% 1
chrUn_KI270467v1 1709 43.60% 1
chrX 678072 0.43% 576
chrY 29314 0.05% 20
3328 contigs with no values (127208470 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18752 255 9592 1360.78 1253
global segment-length histogram

Files

Filename Size md5
ENCFF140KYF.bed.gz 498.31 KB 462e8654970f84cdd870f1aea9f6a9e0
ENCFF140KYF.tabix.bed.gz 216.88 KB bc860de052a78ec0629e64c2da25e14c
ENCFF140KYF.tabix.bed.gz.tbi 129.5 KB 68c713660c04d1eb178526cecf689669
genomic_resource.yaml 2.1 KB f974fa38383a3c3b32b1983026a38103
statistics/