Resource

Id Histone_ChIP-seq/ENCSR553OEUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR553OEU [biosample_summary="Homo sapiens IMR-90" and target="H3K79me1"]
Description
Labels
  • accession: ENCSR553OEU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001196/
  • biosample_summary: Homo sapiens IMR-90
  • date_created: 2015-10-01T07:16:11.787520+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR553OEU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K79me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR553OEU float

Histone_ChIP-seq_ENCSR553OEU
Histone_ChIP-seq ENCSR553OEU [biosample_summary="Homo sapiens IMR-90" and target="H3K79me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR553OEU [1.63, 20.4]
n
114,186,877
mean
5.1
sd
1.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1141868773.55% 373641
chr1 10227790 4.11% 33745
chr2 9122463 3.77% 30219
chr3 7402692 3.73% 25520
chr4 4299047 2.26% 15706
chr5 5851282 3.22% 20110
chr6 5707361 3.34% 19656
chr7 5808235 3.65% 19406
chr8 4671387 3.22% 15503
chr9 5285225 3.82% 16719
chr10 5957172 4.45% 19404
chr11 6015148 4.45% 19220
chr12 5857107 4.39% 19832
chr13 3186050 2.79% 10723
chr14 3749855 3.50% 12671
chr15 4787420 4.69% 15567
chr16 4690760 5.19% 14131
chr17 6242941 7.50% 18992
chr18 2265505 2.82% 7830
chr19 4495758 7.67% 12194
chr20 3492249 5.42% 10506
chr21 1277778 2.74% 4017
chr22 2893961 5.69% 8225
chrX 899691 0.58% 3745
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 373641 100 5837 305.61 227
global segment-length histogram

Files

Filename Size md5
ENCFF505MKR.bed.gz 7.85 MB 349c533b417ce7fd8fbeb99ca01ebd51
ENCFF505MKR.tabix.bed.gz 3.58 MB 020fd1065ae1e8afbeadac789bf5ac8c
ENCFF505MKR.tabix.bed.gz.tbi 253.49 KB 505a265cd4d5238d62c00ca5638bdaa0
genomic_resource.yaml 1.37 KB 5899cf3efc0d8a6fb45c02b805a87954
statistics/