Resource

Id Histone_ChIP-seq/ENCSR553IAWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR553IAW [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR553IAW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (53 years)
  • date_created: 2016-10-19T23:12:57.280186+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR553IAW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR553IAW float

Histone_ChIP-seq_ENCSR553IAW
Histone_ChIP-seq ENCSR553IAW [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR553IAW [1.38, 7.57]
n
9,615,154
mean
3.53
sd
0.723

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96151540.30% 17018
chr1 1110448 0.45% 1953
chr2 631476 0.26% 1159
chr3 481311 0.24% 924
chr4 202216 0.11% 390
chr5 344663 0.19% 642
chr6 317646 0.19% 643
chr7 329536 0.21% 630
chr8 349145 0.24% 625
chr9 503776 0.36% 850
chr10 480418 0.36% 871
chr11 662191 0.49% 1140
chr12 452582 0.34% 816
chr13 106205 0.09% 216
chr14 364801 0.34% 618
chr15 311403 0.31% 561
chr16 446489 0.49% 767
chr17 810046 0.97% 1283
chr18 138987 0.17% 272
chr19 698484 1.19% 1136
chr20 301092 0.47% 549
chr21 148287 0.32% 265
chr22 396856 0.78% 642
chrX 27096 0.02% 66
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17018 215 4276 565 478
global segment-length histogram

Files

Filename Size md5
ENCFF336DDM.bed.gz 326.49 KB e4180fdd35e36f4b693a4ab23d729b8d
ENCFF336DDM.tabix.bed.gz 172.12 KB 737e0887d09d5a192e3b8666a61bb991
ENCFF336DDM.tabix.bed.gz.tbi 96.57 KB a7531d45a2199a27036106f3d04746ae
genomic_resource.yaml 1.53 KB 720a43f453e96cc3ef5acc1d7216e767
statistics/