Resource

Id Histone_ChIP-seq/ENCSR549BWFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR549BWF [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR549BWF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:46.382613+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR549BWF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR549BWF float

Histone_ChIP-seq_ENCSR549BWF
Histone_ChIP-seq ENCSR549BWF [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR549BWF [1.97, 75.7]
n
71,209,898
mean
32.1
sd
20.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 712098982.21% 38409
chr1 6824575 2.74% 3606
chr2 5112463 2.11% 2847
chr3 4287722 2.16% 2291
chr4 3069520 1.61% 1727
chr5 3714740 2.05% 2007
chr6 4277197 2.50% 2359
chr7 3514328 2.21% 1994
chr8 2885651 1.99% 1576
chr9 2951213 2.13% 1634
chr10 3188300 2.38% 1781
chr11 3755929 2.78% 1935
chr12 3684589 2.76% 1894
chr13 1782330 1.56% 1054
chr14 2261091 2.11% 1223
chr15 2237791 2.19% 1220
chr16 2631621 2.91% 1425
chr17 3727785 4.48% 1906
chr18 1421395 1.77% 809
chr19 3906601 6.66% 1992
chr20 1779795 2.76% 947
chr21 741299 1.59% 429
chr22 1490683 2.93% 753
chrX 1963280 1.26% 1000
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38409 245 35453 1853.99 1294
global segment-length histogram

Files

Filename Size md5
ENCFF653PXI.bed.gz 980.15 KB 70731cb98372227845c3dfe02a87e061
ENCFF653PXI.tabix.bed.gz 433.95 KB db0a683fb08293979b4497025c5f10be
ENCFF653PXI.tabix.bed.gz.tbi 221.01 KB 9d9fc8c8d6ee84ab3cbdc7b4499561af
genomic_resource.yaml 1.75 KB c1e253ce2f62a1716debdf7105246eaf
statistics/