Resource

Id Histone_ChIP-seq/ENCSR548LZScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR548LZS [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (34 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR548LZS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002078/
  • biosample_summary: Homo sapiens right cardiac atrium tissue male adult (34 years)
  • date_created: 2015-09-16T19:17:21.247288+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR548LZS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR548LZS float

Histone_ChIP-seq_ENCSR548LZS
Histone_ChIP-seq ENCSR548LZS [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (34 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR548LZS [1.25, 57]
n
38,839,786
mean
13.4
sd
7.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 388397861.21% 31512
chr1 3781155 1.52% 3031
chr2 2688830 1.11% 2170
chr3 2298019 1.16% 1789
chr4 1765100 0.93% 1442
chr5 1992023 1.10% 1593
chr6 2351967 1.38% 1853
chr7 1922702 1.21% 1627
chr8 1516094 1.04% 1235
chr9 1584051 1.14% 1264
chr10 1747306 1.31% 1388
chr11 2003170 1.48% 1529
chr12 2128219 1.60% 1698
chr13 905335 0.79% 757
chr14 1254738 1.17% 950
chr15 1273046 1.25% 1006
chr16 1326426 1.47% 1078
chr17 2004792 2.41% 1634
chr18 756130 0.94% 608
chr19 2165041 3.69% 2047
chr20 947205 1.47% 740
chr21 389412 0.83% 340
chr22 769796 1.51% 629
chrX 1225202 0.79% 1074
chrY 44027 0.08% 30
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31512 190 12087 1232.54 932
global segment-length histogram

Files

Filename Size md5
ENCFF403WAJ.bed.gz 838.57 KB 8001f32f9f9b4e6013928ea20c1e4e97
ENCFF403WAJ.tabix.bed.gz 358.75 KB 09757618deac9acbbbd7e0ba6207043c
ENCFF403WAJ.tabix.bed.gz.tbi 176.98 KB 9642eb3493f23fbaa2ceac680d1862c3
genomic_resource.yaml 1.53 KB 03bcf977514d64e367e80203370f1f89
statistics/