Resource

Id Histone_ChIP-seq/ENCSR546HZFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR546HZF [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR546HZF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (53 years)
  • date_created: 2016-10-19T23:12:24.480939+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR546HZF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR546HZF float

Histone_ChIP-seq_ENCSR546HZF
Histone_ChIP-seq ENCSR546HZF [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR546HZF [1.31, 21.3]
n
89,707,113
mean
4.88
sd
2.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 897071132.79% 74396
chr1 5238754 2.10% 4721
chr1_KI270706v1_random 1304 0.74% 2
chr1_KI270708v1_random 825 0.65% 1
chr1_KI270709v1_random 17232 25.77% 18
chr1_KI270712v1_random 3845 2.18% 3
chr2 5598601 2.31% 5327
chr2_KI270716v1_random 8906 5.79% 2
chr3 4813843 2.43% 4522
chr4 5056976 2.66% 4745
chr4_GL000008v2_random 5661 2.70% 3
chr5 6025316 3.32% 5080
chr5_GL000208v1_random 19849 21.41% 16
chr6 4184624 2.45% 4025
chr7 6111993 3.84% 4713
chr8 4297891 2.96% 3762
chr9 2753905 1.99% 2476
chr9_KI270719v1_random 5527 3.13% 6
chr9_KI270720v1_random 4203 10.76% 4
chr10 4117147 3.08% 3283
chr11 3925372 2.91% 3187
chr12 4102650 3.08% 3088
chr13 2279456 1.99% 2286
chr14 2487959 2.32% 2331
chr14_GL000009v2_random 4109 2.04% 6
chr14_GL000194v1_random 2490 1.30% 2
chr14_GL000225v1_random 114449 54.20% 45
chr14_KI270722v1_random 32869 16.94% 12
chr14_KI270723v1_random 7338 19.25% 5
chr14_KI270724v1_random 10739 27.15% 7
chr14_KI270725v1_random 4010 2.32% 3
chr15 2317654 2.27% 2060
chr16 2807817 3.11% 2226
chr16_KI270728v1_random 2740 0.15% 4
chr17 1521415 1.83% 1270
chr17_GL000205v2_random 44965 24.23% 9
chr17_KI270729v1_random 123550 43.99% 33
chr17_KI270730v1_random 26390 23.45% 7
chr18 1644174 2.05% 1641
chr19 8579376 14.64% 3626
chr20 1717249 2.66% 1545
chr21 1305894 2.80% 1160
chr22 926347 1.82% 815
chr22_KI270732v1_random 10138 24.40% 9
chr22_KI270733v1_random 9099 5.06% 14
chr22_KI270735v1_random 18360 42.89% 15
chr22_KI270736v1_random 156181 85.85% 24
chr22_KI270737v1_random 1442 1.39% 1
chr22_KI270738v1_random 54751 55.10% 17
chrUn_GL000214v1 3923 2.85% 6
chrUn_GL000216v2 88286 49.99% 29
chrUn_GL000218v1 5821 3.61% 11
chrUn_GL000219v1 19193 10.71% 14
chrUn_GL000220v1 1030 0.64% 2
chrUn_GL000224v1 26678 14.85% 15
chrUn_KI270302v1 353 15.52% 1
chrUn_KI270429v1 753 55.33% 1
chrUn_KI270435v1 19269 20.72% 12
chrUn_KI270438v1 59172 52.59% 31
chrUn_KI270442v1 211097 53.84% 86
chrUn_KI270448v1 3444 43.09% 2
chrUn_KI270465v1 519 29.26% 1
chrUn_KI270467v1 840 21.43% 1
chrUn_KI270468v1 1470 36.25% 1
chrUn_KI270507v1 5054 94.41% 1
chrUn_KI270508v1 1278 65.50% 1
chrUn_KI270509v1 1021 44.05% 1
chrUn_KI270510v1 1050 43.48% 2
chrUn_KI270511v1 4786 58.89% 1
chrUn_KI270512v1 6373 28.09% 5
chrUn_KI270515v1 4100 64.46% 2
chrUn_KI270516v1 942 72.46% 1
chrUn_KI270517v1 1706 52.44% 1
chrUn_KI270518v1 1264 57.82% 1
chrUn_KI270519v1 73122 52.94% 50
chrUn_KI270521v1 2599 34.01% 2
chrUn_KI270522v1 3136 55.27% 1
chrUn_KI270538v1 23173 25.38% 17
chrUn_KI270580v1 919 59.18% 1
chrUn_KI270584v1 2217 49.12% 2
chrUn_KI270588v1 2926 47.52% 2
chrUn_KI270589v1 3019 6.79% 1
chrUn_KI270590v1 3821 81.56% 4
chrUn_KI270591v1 4940 85.23% 2
chrUn_KI270593v1 996 32.75% 1
chrUn_KI270741v1 418 0.27% 1
chrUn_KI270742v1 2714 1.45% 4
chrUn_KI270743v1 1330 0.63% 3
chrUn_KI270744v1 4452 2.64% 3
chrUn_KI270746v1 5446 8.19% 7
chrUn_KI270747v1 1205 0.61% 1
chrUn_KI270749v1 5651 3.56% 5
chrUn_KI270750v1 7159 4.81% 9
chrUn_KI270751v1 11258 7.47% 16
chrUn_KI270753v1 744 1.18% 1
chrUn_KI270754v1 2998 7.46% 4
chrUn_KI270756v1 7525 9.45% 5
chrUn_KI270757v1 15946 22.38% 11
chrX 6488764 4.16% 5817
chrY 55828 0.10% 40
3267 contigs with no values (120024609 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74396 255 111973 1205.81 862
global segment-length histogram

Files

Filename Size md5
ENCFF737HHR.bed.gz 1.5 MB a46e99b91df7d5ef6f5b03e97c513035
ENCFF737HHR.tabix.bed.gz 763.98 KB 76eb3e4b0217a742924d60f94f315439
ENCFF737HHR.tabix.bed.gz.tbi 314.09 KB bb20b05af8297edccc6064bda2c286e4
genomic_resource.yaml 1.5 KB 82eec314c1ac9b0089972235f1bbf5c5
statistics/