Resource

Id Histone_ChIP-seq/ENCSR545ZQTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR545ZQT [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR545ZQT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years)
  • date_created: 2021-08-25T18:07:39.162074+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR545ZQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (85 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR545ZQT float

Histone_ChIP-seq_ENCSR545ZQT
Histone_ChIP-seq ENCSR545ZQT [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR545ZQT [1.72, 19.5]
n
40,414,397
mean
8.73
sd
3.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 404143971.26% 27937
chr1 3970648 1.59% 2704
chr2 2784524 1.15% 1895
chr3 2450432 1.24% 1617
chr4 1645468 0.87% 1059
chr5 2032027 1.12% 1331
chr6 2395618 1.40% 1610
chr7 1909445 1.20% 1394
chr8 1592329 1.10% 1101
chr9 1643058 1.19% 1164
chr10 1755790 1.31% 1220
chr11 2221231 1.64% 1492
chr12 2165454 1.62% 1441
chr13 912603 0.80% 620
chr14 1338042 1.25% 898
chr15 1260409 1.24% 881
chr16 1555120 1.72% 1102
chr17 2251440 2.70% 1556
chr18 741821 0.92% 540
chr19 2500596 4.27% 1781
chr20 1019066 1.58% 724
chr21 368383 0.79% 269
chr22 884470 1.74% 656
chrX 1016423 0.65% 882
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27937 215 13287 1446.63 1178
global segment-length histogram

Files

Filename Size md5
ENCFF029MIT.bed.gz 588.62 KB 5c2345775f0f8cdca2cf6b64dd924a82
ENCFF029MIT.tabix.bed.gz 292.38 KB 3817b326fad70882970b2e4ebe859cba
ENCFF029MIT.tabix.bed.gz.tbi 158.13 KB c02df5362c4caf27dc4651af8b70a892
genomic_resource.yaml 1.7 KB 8d2221a167923e05dce0219a818db99a
statistics/