Resource

Id Histone_ChIP-seq/ENCSR540UZVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR540UZV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR540UZV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000192/
  • biosample_summary: Homo sapiens smooth muscle cell originated from H9
  • date_created: 2016-04-28T19:24:37.326830+00:00
  • date_released: 2016-11-01
  • doi: 10.17989/ENCSR540UZV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR540UZV float

Histone_ChIP-seq_ENCSR540UZV
Histone_ChIP-seq ENCSR540UZV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR540UZV [1.53, 56.9]
n
50,647,114
mean
8.64
sd
6.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 506471141.57% 56824
chr1 4828594 1.94% 5296
chr1_KI270713v1_random 905 2.22% 2
chr2 3894081 1.61% 4466
chr3 3316692 1.67% 3721
chr4 2391549 1.26% 2722
chr5 2942888 1.62% 3343
chr6 3144099 1.84% 3525
chr7 2439300 1.53% 2788
chr8 2223300 1.53% 2603
chr9 2133853 1.54% 2396
chr10 2413390 1.80% 2723
chr11 2787988 2.06% 3054
chr12 2713807 2.04% 2907
chr13 1204675 1.05% 1399
chr14 1742455 1.63% 1917
chr15 1663671 1.63% 1877
chr16 1551521 1.72% 1815
chr17 2404357 2.89% 2655
chr17_GL000205v2_random 886 0.48% 2
chr18 1192340 1.48% 1347
chr19 1816052 3.10% 1898
chr20 1185104 1.84% 1312
chr21 664960 1.42% 759
chr22 892790 1.76% 996
chrUn_GL000195v1 1511 0.83% 3
chrUn_KI270438v1 1118 0.99% 3
chrUn_KI270466v1 405 32.85% 1
chrUn_KI270467v1 1444 36.84% 2
chrX 1093379 0.70% 1292
3337 contigs with no values (185777610 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56824 200 11945 891.3 653
global segment-length histogram

Files

Filename Size md5
ENCFF938KHV.bed.gz 1.39 MB 657a637ec36ba10508f6ee600abafb18
ENCFF938KHV.tabix.bed.gz 624.39 KB 8b145bbb0fed88491cfbc0c451d03b00
ENCFF938KHV.tabix.bed.gz.tbi 231.25 KB d99d7eacf757d4b12b6a45fc60fa4278
genomic_resource.yaml 1.98 KB 5a6758ca2f5f9e5605892c8e7518bb4a
statistics/