Resource

Id Histone_ChIP-seq/ENCSR538JMWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR538JMW [biosample_summary="Homo sapiens small intestine tissue female adult (30 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR538JMW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:13.062807+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR538JMW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR538JMW float

Histone_ChIP-seq_ENCSR538JMW
Histone_ChIP-seq ENCSR538JMW [biosample_summary="Homo sapiens small intestine tissue female adult (30 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR538JMW [1.91, 9.4]
n
11,412,434
mean
4.22
sd
0.954

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 114124340.35% 39590
chr1 1232483 0.50% 4262
chr2 971314 0.40% 3387
chr3 737554 0.37% 2604
chr4 455435 0.24% 1694
chr5 656396 0.36% 2219
chr6 692733 0.41% 2469
chr7 492686 0.31% 1742
chr8 451668 0.31% 1601
chr9 490382 0.35% 1716
chr10 550068 0.41% 1906
chr11 686557 0.51% 2344
chr12 491040 0.37% 1770
chr13 245811 0.21% 898
chr14 417499 0.39% 1411
chr15 423603 0.42% 1408
chr16 418257 0.46% 1406
chr17 578582 0.69% 1934
chr18 268814 0.33% 963
chr19 343835 0.59% 1122
chr20 350092 0.54% 1163
chr21 160894 0.34% 557
chr22 254011 0.50% 846
chrX 42720 0.03% 168
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39590 135 1940 288.27 249
global segment-length histogram

Files

Filename Size md5
ENCFF912WPJ.bed.gz 751.05 KB cb428e293a9e63b9e2d23d723bbc2609
ENCFF912WPJ.tabix.bed.gz 389.75 KB 8d6839f14b6f80e3db0e391c7dde0357
ENCFF912WPJ.tabix.bed.gz.tbi 169.92 KB 1d989a6dcdf51fef20dd909cb3447566
genomic_resource.yaml 2.22 KB fc227663aa2542b1767d4968f7ebc3f9
statistics/