Resource

Id Histone_ChIP-seq/ENCSR533YIKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR533YIK [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR533YIK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (41 years)
  • date_created: 2022-05-11T01:55:08.664864+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR533YIK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR533YIK float

Histone_ChIP-seq_ENCSR533YIK
Histone_ChIP-seq ENCSR533YIK [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR533YIK [1.74, 35.1]
n
31,554,335
mean
14.3
sd
6.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 315543350.98% 22660
chr1 3112311 1.25% 2230
chr2 2177780 0.90% 1498
chr3 1858984 0.94% 1290
chr4 1283630 0.67% 886
chr5 1511886 0.83% 1025
chr6 1818299 1.06% 1297
chr7 1531482 0.96% 1128
chr8 1147553 0.79% 807
chr9 1349823 0.98% 979
chr10 1397930 1.04% 956
chr11 1714817 1.27% 1156
chr12 1663074 1.25% 1174
chr13 637395 0.56% 452
chr14 1060875 0.99% 758
chr15 1019982 1.00% 741
chr16 1268777 1.40% 937
chr17 1836418 2.21% 1316
chr18 539142 0.67% 395
chr19 1938116 3.31% 1528
chr20 783383 1.22% 583
chr21 320295 0.69% 243
chr22 715352 1.41% 549
chrX 867031 0.56% 732
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22660 212 10725 1392.51 1208.5
global segment-length histogram

Files

Filename Size md5
ENCFF830CCA.bed.gz 585.09 KB 84ef21ce12677b9f41ed68d14450fc0f
ENCFF830CCA.tabix.bed.gz 258.76 KB 1e0ae30ab60d2fe7b1331022f7e56d6b
ENCFF830CCA.tabix.bed.gz.tbi 142.38 KB 25847531f5012acbf25956e4bc00c6f1
genomic_resource.yaml 1.53 KB d6cb33bd4812805c3ff92d37c62e40e6
statistics/