Resource

Id Histone_ChIP-seq/ENCSR532FEOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR532FEO [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR532FEO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004222/
  • biosample_summary: Homo sapiens stomach smooth muscle tissue female adult (84 years)
  • date_created: 2015-09-15T19:52:35.029043+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR532FEO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (84 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR532FEO float

Histone_ChIP-seq_ENCSR532FEO
Histone_ChIP-seq ENCSR532FEO [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR532FEO [1.97, 93.7]
n
59,741,430
mean
28
sd
19.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 597414301.86% 52148
chr1 5923828 2.38% 5051
chr2 4264325 1.76% 3891
chr3 3447506 1.74% 3054
chr4 2376646 1.25% 2048
chr5 2863092 1.58% 2497
chr6 3277429 1.92% 2774
chr7 2804129 1.76% 2481
chr8 2346295 1.62% 2185
chr9 2683464 1.94% 2383
chr10 2855478 2.13% 2719
chr11 3316832 2.46% 2723
chr12 3102062 2.33% 2601
chr13 1334154 1.17% 1271
chr14 1963049 1.83% 1650
chr15 2050119 2.01% 1814
chr16 2289276 2.53% 2023
chr17 3364582 4.04% 2798
chr18 1039043 1.29% 975
chr19 3294297 5.62% 2675
chr20 1583993 2.46% 1412
chr21 586494 1.26% 588
chr22 1386464 2.73% 1228
chrX 1587098 1.02% 1301
chrY 1775 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52148 165 19303 1145.61 754
global segment-length histogram

Files

Filename Size md5
ENCFF596MVL.bed.gz 1.06 MB 1b4b8d7269ec93bf10c14e2fb15f603a
ENCFF596MVL.tabix.bed.gz 524.9 KB f6dd6a5e014746e7c6522673c77ef163
ENCFF596MVL.tabix.bed.gz.tbi 230.74 KB 5c48bbddc1bb5e920743060255d8bd39
genomic_resource.yaml 1.54 KB aaa305efc8da865d6986c201017b88db
statistics/