Resource

Id Histone_ChIP-seq/ENCSR531VWScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR531VWS [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR531VWS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)
  • date_created: 2020-07-02T16:47:44.657928+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR531VWS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (77 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR531VWS float

Histone_ChIP-seq_ENCSR531VWS
Histone_ChIP-seq ENCSR531VWS [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (77 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR531VWS [1.8, 55.9]
n
51,243,504
mean
9.78
sd
7.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 512435041.59% 41125
chr1 5419777 2.18% 4198
chr2 3765584 1.55% 3158
chr3 3002367 1.51% 2470
chr4 1559296 0.82% 1325
chr5 2281911 1.26% 1901
chr6 2780359 1.63% 2281
chr7 2151706 1.35% 1804
chr8 1864028 1.28% 1633
chr9 2306948 1.67% 1851
chr10 2476142 1.85% 2002
chr11 2828081 2.09% 2081
chr12 2746943 2.06% 2123
chr13 961957 0.84% 839
chr14 1903287 1.78% 1502
chr15 1708221 1.67% 1351
chr16 2078593 2.30% 1680
chr17 3220044 3.87% 2379
chr18 908523 1.13% 793
chr19 2906706 4.96% 2207
chr20 1530557 2.38% 1267
chr21 656642 1.41% 558
chr22 1346014 2.65% 1008
chrX 813227 0.52% 693
chrY 26591 0.05% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41125 245 14873 1246.04 958
global segment-length histogram

Files

Filename Size md5
ENCFF639KHG.bed.gz 971.76 KB 23ce801f7720ff476bb164e67fda1aa2
ENCFF639KHG.tabix.bed.gz 447.77 KB 191bd696be94c086416710911162c376
ENCFF639KHG.tabix.bed.gz.tbi 186.81 KB 869b0ea2b88228ad51e48d657e97a3c7
genomic_resource.yaml 1.86 KB 06507fdbd26a437dcbd18f0dbe1c24ec
statistics/