Resource
| Id | Histone_ChIP-seq/ENCSR531QHM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR531QHM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN331AXD|/analyses/ENCAN331AXD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN331AXD|/analyses/ENCAN331AXD/} has in progress subobject document {6ba8e132-225a-49bd-9dc7-bfe3325a107d|/documents/6ba8e132-225a-49bd-9dc7-bfe3325a107d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF607URL|/files/ENCFF607URL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF607URL|/files/ENCFF607URL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.06. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR531QHM | float |
Histone_ChIP-seq_ENCSR531QHM |
Histone_ChIP-seq ENCSR531QHM [biosample_summary="Homo sapiens neural cell originated from H1" and target="H3K9ac"]
|
 |
[1.97, 99.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 44414536 | 1.38% | 35397 |
| chr1 | 4263750 | 1.71% | 3401 |
| chr2 | 3172022 | 1.31% | 2532 |
| chr3 | 2418854 | 1.22% | 1980 |
| chr4 | 1681373 | 0.88% | 1331 |
| chr5 | 2313285 | 1.27% | 1787 |
| chr6 | 2475796 | 1.45% | 1941 |
| chr7 | 2305506 | 1.45% | 1787 |
| chr8 | 1836549 | 1.27% | 1501 |
| chr9 | 1764797 | 1.28% | 1433 |
| chr10 | 1898237 | 1.42% | 1559 |
| chr11 | 2566792 | 1.90% | 2027 |
| chr12 | 2356244 | 1.77% | 1849 |
| chr13 | 956421 | 0.84% | 779 |
| chr14 | 1616664 | 1.51% | 1245 |
| chr15 | 1413381 | 1.39% | 1095 |
| chr16 | 1773709 | 1.96% | 1421 |
| chr17 | 2448877 | 2.94% | 1897 |
| chr18 | 721815 | 0.90% | 628 |
| chr19 | 2418375 | 4.13% | 1876 |
| chr20 | 1213515 | 1.88% | 1000 |
| chr21 | 381465 | 0.82% | 344 |
| chr22 | 1028783 | 2.02% | 845 |
| chrX | 1356435 | 0.87% | 1119 |
| chrY | 31891 | 0.06% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 35397 | 203 | 32825 | 1254.75 | 937 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF076TJU.bed.gz | 934.64 KB | 498941179b469389bf0034da5ad99be5 |
| ENCFF076TJU.tabix.bed.gz | 401.73 KB | 7872dddf9c59dabe59a287d4ca1c03c9 |
| ENCFF076TJU.tabix.bed.gz.tbi | 189.18 KB | f26571737c1fbda86139aa928a4ce9c7 |
| genomic_resource.yaml | 3.07 KB | 3ffd878029a89809b17acea1c8fe5a06 |
| statistics/ |