Resource
| Id | Histone_ChIP-seq/ENCSR530LYV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR530LYV [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo (108 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN694WKV|/analyses/ENCAN694WKV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF938KLD|/files/ENCFF938KLD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21921677 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF759CGB|/files/ENCFF759CGB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21841149 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR530LYV | float |
Histone_ChIP-seq_ENCSR530LYV |
Histone_ChIP-seq ENCSR530LYV [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K36me3"]
|
 |
[1.7, 16] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 118376165 | 3.68% | 238715 |
| chr1 | 11300668 | 4.54% | 22482 |
| chr2 | 8685928 | 3.59% | 19140 |
| chr3 | 7242069 | 3.65% | 15459 |
| chr4 | 4671801 | 2.46% | 10695 |
| chr5 | 5659596 | 3.12% | 12230 |
| chr6 | 5331940 | 3.12% | 11383 |
| chr7 | 5583891 | 3.50% | 11525 |
| chr8 | 4102735 | 2.83% | 8947 |
| chr9 | 5717141 | 4.13% | 11075 |
| chr10 | 5482606 | 4.10% | 11824 |
| chr11 | 6199568 | 4.59% | 11551 |
| chr12 | 6188603 | 4.64% | 12133 |
| chr13 | 2413620 | 2.11% | 5567 |
| chr14 | 3993523 | 3.73% | 8367 |
| chr15 | 4315853 | 4.23% | 8929 |
| chr16 | 5508596 | 6.10% | 9669 |
| chr17 | 6812080 | 8.18% | 12176 |
| chr18 | 1941258 | 2.42% | 4527 |
| chr19 | 6516141 | 11.12% | 10767 |
| chr20 | 3851799 | 5.98% | 6925 |
| chr21 | 1473764 | 3.16% | 2745 |
| chr22 | 3387861 | 6.67% | 5423 |
| chrX | 1909153 | 1.22% | 4926 |
| chrY | 85971 | 0.15% | 250 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 238715 | 150 | 12318 | 495.89 | 331 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF380EGR.bed.gz | 4.63 MB | 68c4c0dc52cef096aeee93d3919a6940 |
| ENCFF380EGR.tabix.bed.gz | 2.25 MB | 718b7c68bc3b877d6c521dfeac2392a5 |
| ENCFF380EGR.tabix.bed.gz.tbi | 212.11 KB | 8a1858d3c5f4cd10507f11792e8a8e62 |
| genomic_resource.yaml | 2.48 KB | 8b5bccb10b557e30f0a0f93c8f4f36ce |
| statistics/ |