Resource
| Id | Histone_ChIP-seq/ENCSR523JCB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR523JCB [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN404AGD|/analyses/ENCAN404AGD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF336SKY|/files/ENCFF336SKY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27427449 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF530HVT|/files/ENCFF530HVT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 43673852 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR523JCB | float |
Histone_ChIP-seq_ENCSR523JCB |
Histone_ChIP-seq ENCSR523JCB [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K36me3"]
|
 |
[1.35, 6.96] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4839888 | 0.15% | 16430 |
| chr1 | 459707 | 0.18% | 1595 |
| chr2 | 291879 | 0.12% | 1074 |
| chr3 | 258686 | 0.13% | 935 |
| chr4 | 166018 | 0.09% | 614 |
| chr5 | 237361 | 0.13% | 841 |
| chr6 | 194775 | 0.11% | 677 |
| chr7 | 217362 | 0.14% | 735 |
| chr8 | 134216 | 0.09% | 495 |
| chr9 | 190997 | 0.14% | 669 |
| chr10 | 183184 | 0.14% | 644 |
| chr11 | 253269 | 0.19% | 878 |
| chr12 | 282996 | 0.21% | 960 |
| chr13 | 80203 | 0.07% | 286 |
| chr14 | 160422 | 0.15% | 560 |
| chr14_GL000225v1_random | 229 | 0.11% | 2 |
| chr15 | 157903 | 0.15% | 553 |
| chr16 | 258445 | 0.29% | 873 |
| chr17 | 303646 | 0.36% | 1016 |
| chr17_KI270729v1_random | 133 | 0.05% | 1 |
| chr18 | 58266 | 0.07% | 210 |
| chr19 | 612886 | 1.05% | 1665 |
| chr20 | 128228 | 0.20% | 445 |
| chr21 | 44337 | 0.09% | 164 |
| chr22 | 140265 | 0.28% | 452 |
| chr22_KI270733v1_random | 1484 | 0.83% | 6 |
| chrM | 4282 | 25.84% | 6 |
| chrUn_GL000195v1 | 184 | 0.10% | 1 |
| chrUn_GL000218v1 | 134 | 0.08% | 1 |
| chrUn_GL000220v1 | 220 | 0.14% | 2 |
| chrUn_KI270333v1 | 249 | 9.23% | 2 |
| chrUn_KI270336v1 | 119 | 11.60% | 1 |
| chrUn_KI270337v1 | 669 | 59.68% | 3 |
| chrUn_KI270438v1 | 2353 | 2.09% | 11 |
| chrUn_KI270466v1 | 656 | 53.20% | 3 |
| chrUn_KI270467v1 | 1580 | 40.31% | 2 |
| chrUn_KI270746v1 | 135 | 0.20% | 1 |
| chrUn_KI270751v1 | 291 | 0.19% | 1 |
| chrX | 11183 | 0.01% | 40 |
| chrY | 936 | <0.01% | 6 |
| 3327 contigs with no values (127543155 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 16430 | 100 | 2747 | 294.58 | 253 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF890CXZ.bed.gz | 321.2 KB | 75c9539864f599de6492c6735c16d005 |
| ENCFF890CXZ.tabix.bed.gz | 164.12 KB | 8432d451abd973a84f0cf2071786a419 |
| ENCFF890CXZ.tabix.bed.gz.tbi | 80.23 KB | 49d25f0a1e4a1e01d1b15c6af393c70c |
| genomic_resource.yaml | 2.59 KB | 164af0898ece9f10afb32a2774e14d7f |
| statistics/ |