Resource
| Id | Histone_ChIP-seq/ENCSR519SOC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR519SOC [biosample_summary="Homo sapiens natural killer cell male adult (21 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN144RSE|/analyses/ENCAN144RSE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN144RSE|/analyses/ENCAN144RSE/} has in progress subobject document {5d9353ef-caa7-49eb-9297-26bcc6f20e92|/documents/5d9353ef-caa7-49eb-9297-26bcc6f20e92/} audit_not_compliant: Processed alignments file {ENCFF150PEQ|/files/ENCFF150PEQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 33312682 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR519SOC | float |
Histone_ChIP-seq_ENCSR519SOC |
Histone_ChIP-seq ENCSR519SOC [biosample_summary="Homo sapiens natural killer cell male adult (21 years)" and target="H3K36me3"]
|
 |
[1.83, 17.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 108433779 | 3.37% | 162044 |
| chr1 | 10955507 | 4.40% | 15530 |
| chr2 | 9033628 | 3.73% | 13495 |
| chr3 | 7140804 | 3.60% | 10879 |
| chr4 | 4231851 | 2.22% | 6958 |
| chr5 | 6006270 | 3.31% | 8859 |
| chr6 | 5428712 | 3.18% | 8110 |
| chr7 | 4834055 | 3.03% | 7708 |
| chr8 | 3658010 | 2.52% | 5955 |
| chr9 | 4486742 | 3.24% | 6524 |
| chr10 | 4602515 | 3.44% | 7002 |
| chr11 | 5648800 | 4.18% | 7863 |
| chr12 | 6066384 | 4.55% | 8828 |
| chr13 | 2319760 | 2.03% | 3783 |
| chr14 | 3956262 | 3.70% | 5929 |
| chr15 | 4013655 | 3.94% | 6124 |
| chr16 | 4556841 | 5.04% | 6555 |
| chr17 | 6074479 | 7.30% | 8664 |
| chr18 | 1842261 | 2.29% | 3032 |
| chr19 | 4835041 | 8.25% | 6921 |
| chr20 | 3186351 | 4.94% | 4456 |
| chr21 | 1237177 | 2.65% | 1850 |
| chr22 | 2612634 | 5.14% | 3659 |
| chrX | 1606789 | 1.03% | 3133 |
| chrY | 99251 | 0.17% | 227 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 162044 | 145 | 17792 | 669.16 | 433 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF246AVP.bed.gz | 3.14 MB | 49e5df79c8dd64cafbd871a4f9ffaaa5 |
| ENCFF246AVP.tabix.bed.gz | 1.54 MB | 70956b052e4c6606e4e80a054ea623ab |
| ENCFF246AVP.tabix.bed.gz.tbi | 159.66 KB | ede3a4a5843760bc573039b12c0937a1 |
| genomic_resource.yaml | 2.21 KB | 821c681541635df0921b2f226ce1ad9d |
| statistics/ |