Resource

Id Histone_ChIP-seq/ENCSR517CFVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR517CFV [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (36 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR517CFV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002324/
  • biosample_summary: Homo sapiens myoepithelial cell of mammary gland female adult (36 years)
  • date_created: 2015-09-15T20:27:46.156183+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR517CFV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (36 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR517CFV float

Histone_ChIP-seq_ENCSR517CFV
Histone_ChIP-seq ENCSR517CFV [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (36 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR517CFV [1.94, 22.4]
n
22,794,158
mean
5.23
sd
1.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 227941580.71% 41659
chr1 1399705 0.56% 2364
chr2 1030228 0.43% 1758
chr3 507731 0.26% 836
chr4 693972 0.36% 1148
chr5 762613 0.42% 1288
chr6 911088 0.53% 1410
chr7 1097958 0.69% 1796
chr8 846537 0.58% 1536
chr9 826170 0.60% 1339
chr10 1183106 0.88% 1915
chr11 654918 0.48% 1224
chr12 873050 0.66% 1575
chr13 588535 0.51% 1032
chr14 695307 0.65% 1228
chr15 454671 0.45% 827
chr16 859844 0.95% 1491
chr17 1013872 1.22% 1626
chr18 318981 0.40% 586
chr19 1113712 1.90% 1911
chr20 741342 1.15% 1243
chr21 185881 0.40% 327
chr22 589261 1.16% 1040
chrX 5445676 3.49% 12159
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41659 145 8831 547.16 433
global segment-length histogram

Files

Filename Size md5
ENCFF610WOX.bed.gz 723.9 KB f85f86d33970222beaf43902b8189688
ENCFF610WOX.tabix.bed.gz 385.84 KB de056217983e3f2fd222565939ebaaa6
ENCFF610WOX.tabix.bed.gz.tbi 143.17 KB 9453333200e2f066280dc0726de93e9a
genomic_resource.yaml 2.07 KB 6d57fe650669ccc2792f306ca3060a3b
statistics/