Resource
| Id | Histone_ChIP-seq/ENCSR516LQO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR516LQO [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN791OOM|/analyses/ENCAN791OOM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN791OOM|/analyses/ENCAN791OOM/} has in progress subobject document {a554fb14-e179-4d41-a80b-996ddfb6a286|/documents/a554fb14-e179-4d41-a80b-996ddfb6a286/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF206AGD|/files/ENCFF206AGD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR516LQO | float |
Histone_ChIP-seq_ENCSR516LQO |
Histone_ChIP-seq ENCSR516LQO [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27ac"]
|
 |
[1.62, 59] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 149889941 | 4.66% | 85821 |
| chr1 | 14857924 | 5.97% | 8098 |
| chr2 | 11412097 | 4.71% | 6684 |
| chr3 | 9536185 | 4.81% | 5560 |
| chr4 | 5594122 | 2.94% | 3620 |
| chr5 | 7364327 | 4.06% | 4422 |
| chr6 | 7915622 | 4.63% | 4912 |
| chr7 | 7257211 | 4.55% | 4386 |
| chr8 | 6335526 | 4.37% | 3795 |
| chr9 | 7107758 | 5.14% | 3961 |
| chr10 | 8082223 | 6.04% | 4425 |
| chr11 | 8318393 | 6.16% | 4437 |
| chr12 | 7337490 | 5.51% | 4173 |
| chr13 | 3556609 | 3.11% | 2058 |
| chr14 | 5088811 | 4.75% | 2907 |
| chr15 | 5236783 | 5.13% | 3039 |
| chr16 | 5175491 | 5.73% | 2955 |
| chr17 | 8176864 | 9.82% | 4095 |
| chr18 | 2703893 | 3.36% | 1681 |
| chr19 | 5910511 | 10.08% | 3034 |
| chr20 | 4055405 | 6.29% | 2370 |
| chr21 | 1911115 | 4.09% | 1159 |
| chr22 | 3914570 | 7.70% | 1951 |
| chrX | 2976791 | 1.91% | 2051 |
| chrY | 64220 | 0.11% | 48 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85821 | 205 | 58281 | 1746.54 | 1062 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF717AYR.bed.gz | 2.1 MB | acaf03b32f7d0234a2f80341f8866a76 |
| ENCFF717AYR.tabix.bed.gz | 943.63 KB | efa99a41dafdf41cd380057cd7aed563 |
| ENCFF717AYR.tabix.bed.gz.tbi | 255.17 KB | 753ccbeed5352aea231eaa8a121558db |
| genomic_resource.yaml | 2.36 KB | 3d67a7989409d73c6b7391a272112faf |
| statistics/ |