Resource
| Id | Histone_ChIP-seq/ENCSR514DNQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR514DNQ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN461YPI|/analyses/ENCAN461YPI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN461YPI|/analyses/ENCAN461YPI/} has in progress subobject document {fec6962d-41d9-4d37-8b78-16af81b1ab60|/documents/fec6962d-41d9-4d37-8b78-16af81b1ab60/} audit_not_compliant: Processed alignments file {ENCFF193NUF|/files/ENCFF193NUF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17287576 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR514DNQ | float |
Histone_ChIP-seq_ENCSR514DNQ |
Histone_ChIP-seq ENCSR514DNQ [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K4me1"]
|
 |
[1.76, 49.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 109839095 | 3.41% | 147425 |
| chr1 | 10831129 | 4.35% | 14397 |
| chr2 | 8257868 | 3.41% | 11773 |
| chr3 | 5232443 | 2.64% | 7593 |
| chr4 | 2824343 | 1.48% | 4299 |
| chr5 | 4391456 | 2.42% | 6646 |
| chr6 | 4395626 | 2.57% | 7057 |
| chr7 | 4994911 | 3.13% | 6922 |
| chr8 | 3826120 | 2.64% | 5762 |
| chr9 | 5612224 | 4.06% | 6842 |
| chr10 | 6171908 | 4.61% | 8627 |
| chr11 | 6982007 | 5.17% | 8572 |
| chr12 | 4600661 | 3.45% | 6334 |
| chr13 | 1790216 | 1.57% | 3012 |
| chr14 | 3659828 | 3.42% | 4661 |
| chr15 | 3861442 | 3.79% | 5459 |
| chr16 | 5568967 | 6.16% | 6507 |
| chr17 | 7854400 | 9.43% | 8892 |
| chr18 | 1805640 | 2.25% | 3007 |
| chr19 | 6098569 | 10.40% | 6860 |
| chr20 | 4054949 | 6.29% | 5330 |
| chr21 | 1438617 | 3.08% | 1913 |
| chr22 | 4220538 | 8.31% | 4777 |
| chrX | 1365233 | 0.87% | 2183 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 147425 | 190 | 26753 | 745.05 | 516 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF579DCG.bed.gz | 3.21 MB | 39203a923d50fb0806fd4a83b63c6622 |
| ENCFF579DCG.tabix.bed.gz | 1.47 MB | c66493561e9289b9743f1cc3758c4163 |
| ENCFF579DCG.tabix.bed.gz.tbi | 325.14 KB | 519fac153edca9837b2f1d77fa2411c3 |
| genomic_resource.yaml | 2.23 KB | dbe9812d7bbe426f51a2447ec8342d0d |
| statistics/ |