Resource
| Id | Histone_ChIP-seq/ENCSR513NFT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR513NFT [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN690PMU|/analyses/ENCAN690PMU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF393ZQJ|/files/ENCFF393ZQJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21530359 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR513NFT | float |
Histone_ChIP-seq_ENCSR513NFT |
Histone_ChIP-seq ENCSR513NFT [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K4me1"]
|
 |
[1.87, 17.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 91874294 | 2.86% | 104911 |
| chr1 | 9693806 | 3.89% | 10747 |
| chr2 | 7562284 | 3.12% | 8603 |
| chr3 | 6009391 | 3.03% | 6878 |
| chr4 | 4032611 | 2.12% | 4876 |
| chr5 | 4977276 | 2.74% | 5635 |
| chr6 | 5660842 | 3.31% | 6612 |
| chr7 | 3995516 | 2.51% | 4839 |
| chr8 | 3742057 | 2.58% | 4375 |
| chr9 | 4084607 | 2.95% | 4609 |
| chr10 | 4507758 | 3.37% | 5030 |
| chr11 | 5278382 | 3.91% | 5818 |
| chr12 | 4476081 | 3.36% | 5203 |
| chr13 | 2060664 | 1.80% | 2482 |
| chr14 | 3251677 | 3.04% | 3635 |
| chr15 | 3300268 | 3.24% | 3645 |
| chr16 | 3180271 | 3.52% | 3605 |
| chr17 | 4743014 | 5.70% | 5168 |
| chr18 | 1918720 | 2.39% | 2195 |
| chr19 | 2499838 | 4.26% | 3021 |
| chr20 | 2632459 | 4.08% | 2921 |
| chr21 | 1155442 | 2.47% | 1303 |
| chr22 | 2023206 | 3.98% | 2176 |
| chrX | 1053902 | 0.68% | 1478 |
| chrY | 34222 | 0.06% | 57 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104911 | 230 | 10256 | 875.74 | 702 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF930IDI.bed.gz | 2.24 MB | 30dba5c069463164f05f8c41bd22c719 |
| ENCFF930IDI.tabix.bed.gz | 1.06 MB | a459d4e24642ce0674be38df79ca1814 |
| ENCFF930IDI.tabix.bed.gz.tbi | 293.61 KB | b156ddcf5b59c8d544183afefec5e9aa |
| genomic_resource.yaml | 2.0 KB | 97d3fc8635ce3b3f602ca14b92c546da |
| statistics/ |