Resource

Id Histone_ChIP-seq/ENCSR513KNScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR513KNS [biosample_summary="Homo sapiens PC-9" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR513KNS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:24:36.296721+00:00
  • date_released: 2017-01-12
  • doi: 10.17989/ENCSR513KNS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR513KNS float

Histone_ChIP-seq_ENCSR513KNS
Histone_ChIP-seq ENCSR513KNS [biosample_summary="Homo sapiens PC-9" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR513KNS [1.27, 31.1]
n
114,322,781
mean
10.9
sd
5.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1143227813.55% 80373
chr1 11846426 4.76% 8044
chr1_KI270706v1_random 241 0.14% 1
chr1_KI270707v1_random 302 0.94% 1
chr1_KI270712v1_random 551 0.31% 1
chr1_KI270713v1_random 2841 6.97% 4
chr2 9222574 3.81% 6526
chr3 7187836 3.62% 5155
chr4 4234193 2.23% 3259
chr4_GL000008v2_random 677 0.32% 2
chr5 5959805 3.28% 4293
chr5_GL000208v1_random 1414 1.53% 2
chr6 7113438 4.16% 4981
chr7 5702960 3.58% 4231
chr8 4775547 3.29% 3418
chr9 4601086 3.32% 3297
chr10 5118633 3.83% 3588
chr11 6183642 4.58% 4149
chr12 5729591 4.30% 3901
chr13 2530248 2.21% 1926
chr14 3649332 3.41% 2439
chr14_GL000009v2_random 601 0.30% 2
chr14_GL000194v1_random 1573 0.82% 2
chr15 3618224 3.55% 2547
chr16 3934500 4.36% 2743
chr17 5575978 6.70% 3585
chr17_GL000205v2_random 4074 2.20% 4
chr18 2305726 2.87% 1740
chr19 4836739 8.25% 3243
chr20 3547343 5.50% 2416
chr21 1076760 2.31% 803
chr22 2467942 4.86% 1629
chr22_KI270733v1_random 687 0.38% 2
chrM 2927 17.67% 6
chrUn_GL000195v1 2505 1.37% 5
chrUn_GL000219v1 3275 1.83% 3
chrUn_KI270438v1 1355 1.20% 3
chrUn_KI270442v1 3543 0.90% 6
chrUn_KI270519v1 540 0.39% 1
chrUn_KI270743v1 614 0.29% 1
chrX 3076538 1.97% 2414
3326 contigs with no values (183587673 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80373 210 24920 1422.4 1009
global segment-length histogram

Files

Filename Size md5
ENCFF600HQS.bed.gz 2.11 MB 6a5f71d43368d4f7702b5ec32c5a5d15
ENCFF600HQS.tabix.bed.gz 904.82 KB 8a7ec096447ff5ca08a0359d91e9e129
ENCFF600HQS.tabix.bed.gz.tbi 301.92 KB 697594eda3a65344c29ad7388415ccc6
genomic_resource.yaml 1.36 KB b4af9e36f4440d2a827f52bcfc2114bc
statistics/