Resource

Id Histone_ChIP-seq/ENCSR506QLLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR506QLL [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR506QLL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000088/
  • biosample_summary: Homo sapiens trophoblast tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:17:03.692502+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR506QLL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR506QLL float

Histone_ChIP-seq_ENCSR506QLL
Histone_ChIP-seq ENCSR506QLL [biosample_summary="Homo sapiens trophoblast tissue female embryo (40 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR506QLL [1.45, 18.3]
n
48,019,765
mean
4.85
sd
1.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 480197651.49% 65084
chr1 5112969 2.05% 6823
chr2 3386854 1.40% 4797
chr3 2666046 1.34% 3715
chr4 1469050 0.77% 2157
chr5 2057940 1.13% 2950
chr6 2331425 1.36% 3486
chr7 2260475 1.42% 3180
chr8 1953503 1.35% 2657
chr9 2337770 1.69% 3097
chr10 2395017 1.79% 3267
chr11 2924265 2.16% 3721
chr12 2126159 1.60% 2962
chr13 813468 0.71% 1267
chr14 1563713 1.46% 2095
chr15 1618604 1.59% 2237
chr16 2213848 2.45% 2771
chr17 3038705 3.65% 3756
chr18 786262 0.98% 1205
chr19 2897214 4.94% 3548
chr20 1630806 2.53% 2176
chr21 495737 1.06% 713
chr22 1556852 3.06% 1886
chrX 383083 0.25% 618
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65084 240 8178 737.81 604
global segment-length histogram

Files

Filename Size md5
ENCFF641HNX.bed.gz 1.55 MB 64db7aa331b718c2bbc5de249e3538ff
ENCFF641HNX.tabix.bed.gz 694.63 KB 26106a4b8c6266b41d57c478807f8154
ENCFF641HNX.tabix.bed.gz.tbi 241.83 KB 579a5fed3e46cd3598cebd793c0a74b5
genomic_resource.yaml 2.01 KB a2baf2c75b75b2eb09dd91bd07e5b6e8
statistics/