Resource
| Id | Histone_ChIP-seq/ENCSR500ZGF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR500ZGF [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN745IOG|/analyses/ENCAN745IOG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN745IOG|/analyses/ENCAN745IOG/} has in progress subobject document {be762022-6207-43ab-ac50-5d2b1eec849e|/documents/be762022-6207-43ab-ac50-5d2b1eec849e/} audit_not_compliant: Processed alignments file {ENCFF180KPZ|/files/ENCFF180KPZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 32226437 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR500ZGF | float |
Histone_ChIP-seq_ENCSR500ZGF |
Histone_ChIP-seq ENCSR500ZGF [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K36me3"]
|
 |
[1.55, 16.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 146799375 | 4.56% | 85416 |
| chr1 | 14467019 | 5.81% | 8091 |
| chr2 | 11367120 | 4.69% | 7093 |
| chr3 | 9335243 | 4.71% | 5877 |
| chr4 | 5785363 | 3.04% | 3871 |
| chr5 | 7181310 | 3.96% | 4417 |
| chr6 | 6738136 | 3.94% | 4284 |
| chr7 | 6713358 | 4.21% | 4223 |
| chr8 | 5054081 | 3.48% | 3267 |
| chr9 | 6424648 | 4.64% | 3734 |
| chr10 | 6623092 | 4.95% | 3970 |
| chr11 | 7394027 | 5.47% | 4000 |
| chr12 | 8281384 | 6.21% | 4501 |
| chr13 | 3165097 | 2.77% | 2154 |
| chr14 | 5292608 | 4.94% | 3067 |
| chr15 | 5548878 | 5.44% | 3243 |
| chr16 | 6458200 | 7.15% | 3217 |
| chr17 | 8267669 | 9.93% | 4276 |
| chr18 | 2385522 | 2.97% | 1668 |
| chr19 | 8785420 | 14.99% | 3960 |
| chr20 | 4327809 | 6.72% | 2297 |
| chr21 | 1669871 | 3.57% | 957 |
| chr22 | 3718577 | 7.32% | 1818 |
| chrX | 1814943 | 1.16% | 1431 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85416 | 228 | 60644 | 1718.64 | 1045 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF767VOC.bed.gz | 1.93 MB | 1f0fff611a2fdad885b7d0858efc1619 |
| ENCFF767VOC.tabix.bed.gz | 906.52 KB | bceddfc89e3041a06c8174ac7f888bb6 |
| ENCFF767VOC.tabix.bed.gz.tbi | 147.64 KB | a005466c150da00bf1483bff6c11bd67 |
| genomic_resource.yaml | 2.24 KB | 08df35093d643d7c2591b11ecc04cbcc |
| statistics/ |