Resource

Id Histone_ChIP-seq/ENCSR499VCQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR499VCQ [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR499VCQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue female adult (51 years)
  • date_created: 2019-01-28T12:23:57.310599+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR499VCQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR499VCQ float

Histone_ChIP-seq_ENCSR499VCQ
Histone_ChIP-seq ENCSR499VCQ [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR499VCQ [1.37, 9.05]
n
48,418,610
mean
3.66
sd
0.852

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 484186101.50% 112701
chr1 5191344 2.09% 11735
chr2 3706853 1.53% 8822
chr3 3250642 1.64% 7965
chr4 1630780 0.86% 4205
chr5 2402427 1.32% 5833
chr6 2641681 1.55% 6682
chr7 2146364 1.35% 5305
chr8 1772221 1.22% 4428
chr9 2256587 1.63% 4993
chr10 2751992 2.06% 6357
chr11 2665104 1.97% 5878
chr12 2186458 1.64% 5151
chr13 871878 0.76% 2277
chr14 1582515 1.48% 3763
chr15 1782090 1.75% 4200
chr16 2055157 2.27% 4439
chr17 3007081 3.61% 6252
chr18 791120 0.98% 2061
chr19 2157632 3.68% 4127
chr20 1455852 2.26% 3253
chr21 474564 1.02% 1152
chr22 1390562 2.74% 2985
chrM 11829 71.39% 15
chrX 235877 0.15% 823
3342 contigs with no values (186287931 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 112701 90 9431 429.62 330
global segment-length histogram

Files

Filename Size md5
ENCFF988OUM.bed.gz 2.28 MB 535c180d8f7dd8c8982219c7667f1726
ENCFF988OUM.tabix.bed.gz 1.1 MB 98ed915ab71a008cf493a598dd394680
ENCFF988OUM.tabix.bed.gz.tbi 268.81 KB fb9c8278d53177e2fa070b992485f7de
genomic_resource.yaml 2.02 KB 2fec70d04c69cc93a966aacba0ae1814
statistics/