Resource

Id Histone_ChIP-seq/ENCSR499IIRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR499IIR [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR499IIR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003124/
  • biosample_summary: Homo sapiens chorion tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:43.447311+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR499IIR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR499IIR float

Histone_ChIP-seq_ENCSR499IIR
Histone_ChIP-seq ENCSR499IIR [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR499IIR [1.56, 31.3]
n
26,034,424
mean
6.22
sd
3.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 260344240.81% 44325
chr1 2809568 1.13% 4702
chr2 1984249 0.82% 3400
chr3 1571829 0.79% 2699
chr4 850797 0.45% 1460
chr5 1158537 0.64% 1983
chr6 1398510 0.82% 2373
chr7 1203622 0.76% 2082
chr8 959642 0.66% 1689
chr9 1173684 0.85% 2047
chr10 1141896 0.85% 1990
chr11 1562036 1.16% 2539
chr12 1343551 1.01% 2254
chr13 536505 0.47% 981
chr14 1000663 0.93% 1600
chr15 821951 0.81% 1395
chr16 929623 1.03% 1579
chr17 1483376 1.78% 2536
chr18 402469 0.50% 724
chr19 1581795 2.70% 2588
chr20 721973 1.12% 1228
chr21 368572 0.79% 642
chr22 692781 1.36% 1154
chrX 336795 0.22% 680
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44325 155 8765 587.35 450
global segment-length histogram

Files

Filename Size md5
ENCFF987FIQ.bed.gz 921.9 KB 5d351669d924efa5dca37d6c71ee33a4
ENCFF987FIQ.tabix.bed.gz 452.45 KB 79a0b3758dc6748e7ba310a5d5078ba0
ENCFF987FIQ.tabix.bed.gz.tbi 170.18 KB 0f7d3fe2c9a25d0b6d765b1d67d4cd7e
genomic_resource.yaml 1.5 KB 8a8e8bb52a9f7bc501ae4d4eb62fd34d
statistics/