Resource

Id Histone_ChIP-seq/ENCSR498PMMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR498PMM [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR498PMM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-15T20:26:37.101355+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR498PMM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR498PMM float

Histone_ChIP-seq_ENCSR498PMM
Histone_ChIP-seq ENCSR498PMM [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR498PMM [1.47, 18.4]
n
99,236,045
mean
4.84
sd
1.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 992360453.08% 136238
chr1 4930612 1.98% 7231
chr2 6798970 2.81% 10274
chr3 4326769 2.18% 7024
chr4 4481702 2.36% 7087
chr5 5577944 3.07% 8185
chr6 4082611 2.39% 6340
chr7 7457782 4.68% 9638
chr8 7934540 5.47% 10818
chr9 2849163 2.06% 4345
chr10 4930751 3.69% 6833
chr11 3691001 2.73% 5519
chr12 5912399 4.44% 7047
chr13 3563287 3.12% 5346
chr14 2357974 2.20% 3409
chr15 2729372 2.68% 3358
chr16 5964618 6.60% 7093
chr17 1589707 1.91% 2056
chr18 3234882 4.02% 4522
chr19 7855388 13.40% 8073
chr20 2298677 3.57% 2965
chr21 1990673 4.26% 2670
chr22 1849593 3.64% 1880
chrX 2324257 1.49% 3704
chrY 503373 0.88% 821
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136238 210 92020 728.4 541
global segment-length histogram

Files

Filename Size md5
ENCFF306KLU.bed.gz 2.63 MB 63dfdb1b573c1fc8a01a786e51ac37ac
ENCFF306KLU.tabix.bed.gz 1.31 MB f135f1a5cbb531e946091883cd2e5f26
ENCFF306KLU.tabix.bed.gz.tbi 299.67 KB 2be50efe273c2ffd7b5a7884d436769f
genomic_resource.yaml 1.47 KB 9b1fc2e82560ae434380cbb1d18891f9
statistics/