Resource

Id Histone_ChIP-seq/ENCSR498NGTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR498NGT [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR498NGT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years)
  • date_created: 2021-08-25T18:07:39.451831+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR498NGT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (85 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR498NGT float

Histone_ChIP-seq_ENCSR498NGT
Histone_ChIP-seq ENCSR498NGT [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR498NGT [1.68, 19.8]
n
63,020,023
mean
5.46
sd
2.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 630200231.96% 50505
chr1 6631135 2.66% 5171
chr2 4498354 1.86% 3730
chr3 3796573 1.91% 3079
chr4 2481426 1.30% 2083
chr5 3410963 1.88% 2764
chr6 3331000 1.95% 2637
chr7 2756398 1.73% 2337
chr8 2428868 1.67% 2054
chr9 3125830 2.26% 2403
chr10 3300009 2.47% 2463
chr11 4063310 3.01% 3130
chr12 3241136 2.43% 2664
chr13 1408318 1.23% 1181
chr14 2215571 2.07% 1737
chr15 2267296 2.22% 1774
chr16 2153482 2.38% 1783
chr17 3623956 4.35% 2810
chr18 1167833 1.45% 963
chr19 2571864 4.39% 2106
chr20 1814737 2.82% 1410
chr21 657439 1.41% 515
chr22 1525402 3.00% 1125
chrX 549123 0.35% 586
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50505 225 32264 1247.8 879
global segment-length histogram

Files

Filename Size md5
ENCFF730HDE.bed.gz 1.01 MB 5c76b7c849bd0ccf8b46670f8b8baa9c
ENCFF730HDE.tabix.bed.gz 515.45 KB 210b753d222a4d233c8c53360c7c9b00
ENCFF730HDE.tabix.bed.gz.tbi 177.73 KB af99d205d18f3b285659f9a90f6f0a88
genomic_resource.yaml 1.7 KB 4fab0b3a7c673682cbeabd543de261c2
statistics/