Resource

Id Histone_ChIP-seq/ENCSR497UROcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR497URO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR497URO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:45.918852+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR497URO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR497URO float

Histone_ChIP-seq_ENCSR497URO
Histone_ChIP-seq ENCSR497URO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR497URO [1.74, 23.5]
n
41,192,171
mean
11.1
sd
4.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 411921711.28% 26107
chr1 4013103 1.61% 2466
chr2 2937845 1.21% 1897
chr3 2510995 1.27% 1539
chr4 1764187 0.93% 1081
chr5 2072365 1.14% 1266
chr6 2455688 1.44% 1548
chr7 1997196 1.25% 1318
chr8 1610711 1.11% 1036
chr9 1710583 1.24% 1099
chr10 1802142 1.35% 1140
chr11 2178601 1.61% 1342
chr12 2121270 1.59% 1301
chr13 986939 0.86% 627
chr14 1378960 1.29% 870
chr15 1296837 1.27% 815
chr16 1542600 1.71% 990
chr17 2206706 2.65% 1378
chr18 814992 1.01% 539
chr19 2402748 4.10% 1587
chr20 1033084 1.60% 668
chr21 408766 0.88% 264
chr22 857209 1.69% 558
chrX 1088644 0.70% 778
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26107 225 13500 1577.82 1339
global segment-length histogram

Files

Filename Size md5
ENCFF406DMM.bed.gz 621.7 KB 8e358ea65bb7f13a7b16de90f6e28c7a
ENCFF406DMM.tabix.bed.gz 289.4 KB 8a2c0f55fbec51a44513dbaf88bc5800
ENCFF406DMM.tabix.bed.gz.tbi 163.06 KB bcee16b5981b2e797c60ebbb602590b9
genomic_resource.yaml 1.77 KB 76ddeb810819b058c45f8c79d564a468
statistics/