Resource

Id Histone_ChIP-seq/ENCSR495GRNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR495GRN [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR495GRN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000305/
  • biosample_summary: Homo sapiens amnion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:30.707291+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR495GRN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR495GRN float

Histone_ChIP-seq_ENCSR495GRN
Histone_ChIP-seq ENCSR495GRN [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR495GRN [1.42, 11.6]
n
3,361,117
mean
4.29
sd
0.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 33611170.10% 5116
chr1 89511 0.04% 163
chr2 98798 0.04% 178
chr3 45180 0.02% 84
chr4 107555 0.06% 180
chr5 93158 0.05% 171
chr6 74970 0.04% 140
chr7 391222 0.25% 599
chr8 372683 0.26% 462
chr9 57007 0.04% 90
chr10 139953 0.10% 218
chr11 145672 0.11% 243
chr12 243590 0.18% 369
chr13 60908 0.05% 99
chr14 111041 0.10% 177
chr15 198255 0.19% 236
chr16 144104 0.16% 209
chr17 73006 0.09% 115
chr18 80214 0.10% 143
chr19 494497 0.84% 705
chr20 55244 0.09% 98
chr21 157296 0.34% 236
chr22 103967 0.20% 161
chrX 11377 0.01% 20
chrY 11909 0.02% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5116 210 7389 656.98 561
global segment-length histogram

Files

Filename Size md5
ENCFF947GCG.bed.gz 93.56 KB 9e977cf924aeb9d66d55fe5fe7242843
ENCFF947GCG.tabix.bed.gz 50.2 KB 357108f9e1b84bdbf2d475222f1d7d30
ENCFF947GCG.tabix.bed.gz.tbi 30.25 KB 8325b8d4af5a5460e8f90cafc4f708f5
genomic_resource.yaml 1.49 KB 56ca41462f09abf0e9e3793943baaeee
statistics/