Resource
| Id | Histone_ChIP-seq/ENCSR494QLL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR494QLL [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN875JOR|/analyses/ENCAN875JOR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF302LAI|/files/ENCFF302LAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF302LAI|/files/ENCFF302LAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.14. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR494QLL | float |
Histone_ChIP-seq_ENCSR494QLL |
Histone_ChIP-seq ENCSR494QLL [biosample_summary="Homo sapiens heart right ventricle tissue female adult (56 years)" and target="H3K4me3"]
|
 |
[1.75, 79] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55003739 | 1.71% | 31078 |
| chr1 | 5527141 | 2.22% | 3066 |
| chr2 | 3793905 | 1.57% | 2164 |
| chr3 | 3105415 | 1.57% | 1717 |
| chr4 | 2194801 | 1.15% | 1211 |
| chr5 | 2649358 | 1.46% | 1440 |
| chr6 | 3218653 | 1.88% | 1793 |
| chr7 | 2683938 | 1.68% | 1563 |
| chr8 | 2063759 | 1.42% | 1202 |
| chr9 | 2297492 | 1.66% | 1353 |
| chr10 | 2393350 | 1.79% | 1399 |
| chr11 | 2908214 | 2.15% | 1553 |
| chr12 | 2946981 | 2.21% | 1600 |
| chr13 | 1169408 | 1.02% | 702 |
| chr14 | 1760962 | 1.65% | 986 |
| chr15 | 1778260 | 1.74% | 998 |
| chr16 | 2106243 | 2.33% | 1220 |
| chr17 | 3180744 | 3.82% | 1744 |
| chr18 | 942866 | 1.17% | 554 |
| chr19 | 3408584 | 5.81% | 1992 |
| chr20 | 1421674 | 2.21% | 826 |
| chr21 | 587827 | 1.26% | 344 |
| chr22 | 1237540 | 2.44% | 695 |
| chrX | 1626624 | 1.04% | 956 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31078 | 220 | 18184 | 1769.86 | 1376.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF974XHZ.bed.gz | 827.17 KB | 3a126f2fc665d40b60d15993112631bc |
| ENCFF974XHZ.tabix.bed.gz | 357.89 KB | 535f73e00646508368951318e782571a |
| ENCFF974XHZ.tabix.bed.gz.tbi | 183.2 KB | eb541b30ebc802eba0595b410d8f8546 |
| genomic_resource.yaml | 2.81 KB | 68803252662d326c50206065813074cc |
| statistics/ |