Resource

Id Histone_ChIP-seq/ENCSR494OPFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR494OPF [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR494OPF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:04.439137+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR494OPF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR494OPF float

Histone_ChIP-seq_ENCSR494OPF
Histone_ChIP-seq ENCSR494OPF [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR494OPF [1.77, 12.7]
n
15,473,145
mean
5.33
sd
1.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 154731450.48% 22177
chr1 1398284 0.56% 2018
chr2 1151315 0.48% 1603
chr3 483987 0.24% 731
chr4 612571 0.32% 811
chr5 806770 0.44% 1147
chr6 1018731 0.60% 1369
chr7 857901 0.54% 1113
chr8 679310 0.47% 1044
chr9 638297 0.46% 862
chr10 923611 0.69% 1288
chr11 684898 0.51% 1046
chr12 860413 0.65% 1150
chr13 311712 0.27% 438
chr14 527871 0.49% 763
chr15 498098 0.49% 759
chr16 607395 0.67% 958
chr17 1059296 1.27% 1428
chr18 281208 0.35% 442
chr19 796634 1.36% 1183
chr20 644624 1.00% 987
chr21 182414 0.39% 289
chr22 354232 0.70% 582
chrX 90913 0.06% 160
chrY 2660 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22177 215 11987 697.71 519
global segment-length histogram

Files

Filename Size md5
ENCFF124CRU.bed.gz 415.46 KB 8dca123263539ff61812f420d795c63f
ENCFF124CRU.tabix.bed.gz 217.63 KB 3dd6c972a7b5eb56f92f5ee83b82754b
ENCFF124CRU.tabix.bed.gz.tbi 103.16 KB 920005e4dd1b13aa0a69119c4b1aed77
genomic_resource.yaml 2.0 KB 532cd6d6712c4bfb91f7eab17add6dea
statistics/