Resource

Id Histone_ChIP-seq/ENCSR494MDBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR494MDB [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR494MDB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:04.106276+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR494MDB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR494MDB float

Histone_ChIP-seq_ENCSR494MDB
Histone_ChIP-seq ENCSR494MDB [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR494MDB [1.81, 37.8]
n
84,963,374
mean
7.49
sd
3.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 849633742.64% 84144
chr1 8794990 3.53% 8329
chr2 6095430 2.52% 6108
chr3 5109945 2.58% 5162
chr4 3166308 1.66% 3352
chr5 4157500 2.29% 4139
chr6 4540106 2.66% 4583
chr7 3662869 2.30% 3883
chr8 3016274 2.08% 3129
chr9 4220897 3.05% 3992
chr10 4474128 3.34% 4319
chr11 5305799 3.93% 5027
chr12 4162155 3.12% 4136
chr13 1741277 1.52% 1781
chr14 3211077 3.00% 3160
chr15 2904160 2.85% 2888
chr16 3246941 3.59% 3235
chr17 5099638 6.13% 4860
chr18 1617598 2.01% 1649
chr19 3656430 6.24% 3548
chr20 2487933 3.86% 2423
chr21 914863 1.96% 1003
chr22 2118146 4.17% 2019
chrX 1232805 0.79% 1397
chrY 26105 0.05% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84144 225 21261 1009.74 734
global segment-length histogram

Files

Filename Size md5
ENCFF444CZR.bed.gz 1.72 MB 0b25f34fcfba925797e03944011e397d
ENCFF444CZR.tabix.bed.gz 852.11 KB 936e1e8b141f130d88fd08c64a3f7c09
ENCFF444CZR.tabix.bed.gz.tbi 234.97 KB 910577c500c740b828e639423b2759c4
genomic_resource.yaml 1.51 KB b8aa8a1f5005b9b4441bf0e0aa1c8ba0
statistics/