Resource

Id Histone_ChIP-seq/ENCSR493MQYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR493MQY [biosample_summary="Homo sapiens stomach tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR493MQY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (37 years)
  • date_created: 2019-04-27T23:01:53.769894+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR493MQY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR493MQY float

Histone_ChIP-seq_ENCSR493MQY
Histone_ChIP-seq ENCSR493MQY [biosample_summary="Homo sapiens stomach tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR493MQY [1.62, 15.1]
n
225,457,611
mean
5.07
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2254576117.01% 148006
chr1 22945319 9.22% 14388
chr2 18004340 7.43% 12190
chr3 15089605 7.61% 10326
chr4 9414093 4.95% 6828
chr5 11788217 6.49% 8016
chr6 12795327 7.49% 8999
chr7 10661920 6.69% 7451
chr8 9619541 6.63% 6613
chr9 10333501 7.47% 6580
chr10 11532032 8.62% 7471
chr11 12040347 8.91% 7402
chr12 11152489 8.37% 7299
chr13 5064462 4.43% 3697
chr14 7814157 7.30% 4933
chr15 8027728 7.87% 5178
chr16 8294679 9.18% 5118
chr17 11783293 14.15% 6870
chr18 4144428 5.16% 3060
chr19 8230832 14.04% 4786
chr20 6489624 10.07% 4050
chr21 2488631 5.33% 1733
chr22 5484529 10.79% 3135
chrX 2189792 1.40% 1816
chrY 68725 0.12% 67
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148006 220 44939 1523.3 1063
global segment-length histogram

Files

Filename Size md5
ENCFF475EJU.bed.gz 3.42 MB b338c1fc740e794f3f3b396a04a241b3
ENCFF475EJU.tabix.bed.gz 1.54 MB 31179c39fad4b93a4555222a248e4216
ENCFF475EJU.tabix.bed.gz.tbi 316.09 KB 2ad48ae0c05ec548bc33f85f380345e6
genomic_resource.yaml 1.7 KB 2831960559ae493bede56a2004520013
statistics/