Resource

Id Histone_ChIP-seq/ENCSR492DBQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR492DBQ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR492DBQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:10:21.460936+00:00
  • date_released: 2017-12-05
  • doi: 10.17989/ENCSR492DBQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR492DBQ float

Histone_ChIP-seq_ENCSR492DBQ
Histone_ChIP-seq ENCSR492DBQ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR492DBQ [1.69, 14.4]
n
8,851,582
mean
4.46
sd
1.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88515820.28% 17641
chr1 957200 0.38% 1891
chr2 578172 0.24% 1133
chr3 517288 0.26% 987
chr4 310798 0.16% 646
chr5 447081 0.25% 843
chr6 586746 0.34% 1079
chr7 410454 0.26% 808
chr8 304927 0.21% 646
chr9 397396 0.29% 797
chr10 449314 0.34% 870
chr11 226312 0.17% 528
chr12 542757 0.41% 1030
chr13 157851 0.14% 319
chr14 378834 0.35% 699
chr15 196651 0.19% 441
chr16 345781 0.38% 747
chr17 565685 0.68% 1148
chr18 151182 0.19% 298
chr19 637310 1.09% 1328
chr20 288523 0.45% 516
chr21 72276 0.15% 151
chr22 223600 0.44% 464
chrX 100397 0.06% 263
chrY 5047 0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17641 190 6488 501.76 409
global segment-length histogram

Files

Filename Size md5
ENCFF384BQZ.bed.gz 376.51 KB 066b06f2ec7a693624cef92b499117cf
ENCFF384BQZ.tabix.bed.gz 185.49 KB c1488d25b28ce84b3e1238f5d9a5d6df
ENCFF384BQZ.tabix.bed.gz.tbi 96.04 KB 87293412ee67868bdd034cc066f51244
genomic_resource.yaml 2.04 KB bf88cd3abe6199751fc816afd6beac79
statistics/