Resource

Id Histone_ChIP-seq/ENCSR489ZLLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR489ZLL [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR489ZLL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (53 years)
  • date_created: 2016-10-19T23:08:22.274306+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR489ZLL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR489ZLL float

Histone_ChIP-seq_ENCSR489ZLL
Histone_ChIP-seq ENCSR489ZLL [biosample_summary="Homo sapiens stomach tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR489ZLL [1.39, 114]
n
56,762,757
mean
36.2
sd
22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 567627571.76% 29567
chr1 5703843 2.29% 2896
chr2 3771905 1.56% 1985
chr3 3147700 1.59% 1606
chr4 2209821 1.16% 1154
chr5 2626157 1.45% 1328
chr6 3172221 1.86% 1661
chr7 2726441 1.71% 1473
chr8 2053140 1.41% 1079
chr9 2413117 1.74% 1305
chr10 2354524 1.76% 1274
chr11 3197492 2.37% 1600
chr12 2966276 2.23% 1466
chr13 1095280 0.96% 599
chr14 1826184 1.71% 922
chr15 1807719 1.77% 943
chr16 2335918 2.59% 1215
chr17 3446302 4.14% 1747
chr18 915091 1.14% 510
chr19 3885675 6.63% 2055
chr20 1538655 2.39% 809
chr21 600369 1.29% 331
chr22 1385199 2.73% 742
chrM 1111 6.71% 1
chrX 1580769 1.01% 865
chrY 1848 <0.01% 1
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29567 270 19871 1919.8 1550
global segment-length histogram

Files

Filename Size md5
ENCFF694HIG.bed.gz 805.51 KB e03493114a1283c92b1fccca9ca2d5a5
ENCFF694HIG.tabix.bed.gz 343.54 KB 3318ec7a688170b27ec00a38b4593edd
ENCFF694HIG.tabix.bed.gz.tbi 170.11 KB 28fd52d205aa272a1c110826a88e08e1
genomic_resource.yaml 1.5 KB 1955c75452a05cf6a4f5f964775add08
statistics/