Resource
| Id | Histone_ChIP-seq/ENCSR489TBW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR489TBW [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN754JAU|/analyses/ENCAN754JAU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF810VUM|/files/ENCFF810VUM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 20778379 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR489TBW | float |
Histone_ChIP-seq_ENCSR489TBW |
Histone_ChIP-seq ENCSR489TBW [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9me3"]
|
 |
[1.98, 27] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 40616209 | 1.26% | 46360 |
| chr1 | 2530402 | 1.02% | 2925 |
| chr2 | 2737882 | 1.13% | 3509 |
| chr3 | 2383462 | 1.20% | 3075 |
| chr4 | 2469679 | 1.30% | 3185 |
| chr5 | 2915159 | 1.61% | 3592 |
| chr6 | 2020926 | 1.18% | 2617 |
| chr7 | 2903741 | 1.82% | 3288 |
| chr8 | 1866572 | 1.29% | 2339 |
| chr9 | 1344811 | 0.97% | 1576 |
| chr10 | 1681719 | 1.26% | 1771 |
| chr11 | 1883322 | 1.39% | 2304 |
| chr12 | 2103599 | 1.58% | 2223 |
| chr13 | 1176546 | 1.03% | 1688 |
| chr14 | 1169594 | 1.09% | 1519 |
| chr15 | 943146 | 0.92% | 1082 |
| chr16 | 1158859 | 1.28% | 1210 |
| chr17 | 621298 | 0.75% | 704 |
| chr18 | 734600 | 0.91% | 986 |
| chr19 | 5409596 | 9.23% | 3740 |
| chr20 | 512302 | 0.79% | 604 |
| chr21 | 805069 | 1.72% | 858 |
| chr22 | 264364 | 0.52% | 269 |
| chrX | 690871 | 0.44% | 1042 |
| chrY | 288690 | 0.50% | 254 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46360 | 275 | 56532 | 876.1 | 634 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF414SUZ.bed.gz | 912.27 KB | 21cb9993304d3c1b16afe7e61b69a278 |
| ENCFF414SUZ.tabix.bed.gz | 460.36 KB | c9a372830d77438fb4bc2a7b5998f456 |
| ENCFF414SUZ.tabix.bed.gz.tbi | 225.46 KB | 7237371233c0b3ca1cd219e77f293321 |
| genomic_resource.yaml | 2.04 KB | a39602f553e19369681ee86f5172f004 |
| statistics/ |