Resource

Id Histone_ChIP-seq/ENCSR489DUVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR489DUV [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR489DUV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (53 years)
  • date_created: 2017-01-24T04:34:52.060341+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR489DUV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR489DUV float

Histone_ChIP-seq_ENCSR489DUV
Histone_ChIP-seq ENCSR489DUV [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR489DUV [1.87, 14.5]
n
794,841
mean
3.35
sd
0.668

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7948410.02% 3151
chr1 75005 0.03% 289
chr2 63114 0.03% 255
chr3 51946 0.03% 210
chr4 34800 0.02% 142
chr5 39073 0.02% 161
chr6 44223 0.03% 177
chr7 33738 0.02% 142
chr8 30157 0.02% 121
chr9 40223 0.03% 155
chr10 35532 0.03% 139
chr11 48494 0.04% 185
chr12 43430 0.03% 168
chr13 14398 0.01% 62
chr14 28227 0.03% 116
chr15 28362 0.03% 108
chr16 28749 0.03% 115
chr17 43664 0.05% 167
chr18 11948 0.01% 45
chr19 34498 0.06% 129
chr20 23829 0.04% 93
chr21 7002 0.01% 28
chr22 20862 0.04% 81
chrX 13567 0.01% 63
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3151 145 808 252.25 229
global segment-length histogram

Files

Filename Size md5
ENCFF003KVZ.bed.gz 55.51 KB 5a0f89afa403f2b70d329714f01a0dfc
ENCFF003KVZ.tabix.bed.gz 31.28 KB 01f7d21da1d41c8cebc4ec41da4ffbcc
ENCFF003KVZ.tabix.bed.gz.tbi 34.81 KB 5d66bec37f60b8c1dd4f9ffc43af89bb
genomic_resource.yaml 1.74 KB 6520b13d23817127323f5b2c7ceb9bae
statistics/