Resource

Id Histone_ChIP-seq/ENCSR487KVVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR487KVV [biosample_summary="Homo sapiens foreskin keratinocyte male newborn (2-4 days)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR487KVV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn (2-4 days)
  • date_created: 2016-12-07T00:46:12.569305+00:00
  • date_released: 2017-10-10
  • doi: 10.17989/ENCSR487KVV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: male newborn (2-4 days)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR487KVV float

Histone_ChIP-seq_ENCSR487KVV
Histone_ChIP-seq ENCSR487KVV [biosample_summary="Homo sapiens foreskin keratinocyte male newborn (2-4 days)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR487KVV [1.33, 7.52]
n
81,926,594
mean
2.88
sd
0.629

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 819265942.55% 99915
chr1 8170885 3.28% 9919
chr2 7229962 2.99% 8842
chr3 6025755 3.04% 7141
chr4 4973742 2.61% 5991
chr5 4904980 2.70% 5931
chr6 5455419 3.19% 6571
chr7 4070968 2.55% 4942
chr8 3841054 2.65% 4642
chr9 3458207 2.50% 4179
chr10 4017180 3.00% 4837
chr11 4050107 3.00% 4848
chr12 4499088 3.38% 5390
chr13 2173659 1.90% 2692
chr14 2662771 2.49% 3256
chr15 2863032 2.81% 3421
chr16 1957856 2.17% 2482
chr17 2770456 3.33% 3531
chr18 2033076 2.53% 2493
chr19 1142965 1.95% 1596
chr20 2001365 3.11% 2472
chr21 1086699 2.33% 1325
chr22 1222016 2.40% 1491
chrX 1224958 0.79% 1787
chrY 90394 0.16% 136
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99915 205 7638 819.96 682
global segment-length histogram

Files

Filename Size md5
ENCFF654RJF.bed.gz 2.58 MB 6176a6b635d119ea3a99bed2e0c4b052
ENCFF654RJF.tabix.bed.gz 1.07 MB 871db23683ffd5b7ed91452dc9372816
ENCFF654RJF.tabix.bed.gz.tbi 335.14 KB b3285c734c16f25b4da4ef2aaec8d1e6
genomic_resource.yaml 1.74 KB 3afd057d9492ebd6dae68d1c4d26cefe
statistics/