Resource
| Id | Histone_ChIP-seq/ENCSR486ZKB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR486ZKB [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN532CMQ|/analyses/ENCAN532CMQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN532CMQ|/analyses/ENCAN532CMQ/} has in progress subobject document {07b8c9cc-2053-4463-99d6-b630092a3b5f|/documents/07b8c9cc-2053-4463-99d6-b630092a3b5f/} audit_not_compliant: Processed alignments file {ENCFF225HFT|/files/ENCFF225HFT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28021958 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR486ZKB | float |
Histone_ChIP-seq_ENCSR486ZKB |
Histone_ChIP-seq ENCSR486ZKB [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K36me3"]
|
 |
[1.74, 17.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 143668719 | 4.47% | 201712 |
| chr1 | 14392522 | 5.78% | 19466 |
| chr2 | 11631649 | 4.80% | 16746 |
| chr3 | 8800375 | 4.44% | 12695 |
| chr4 | 6303709 | 3.31% | 9335 |
| chr5 | 7712526 | 4.25% | 10897 |
| chr6 | 6432024 | 3.77% | 9386 |
| chr7 | 7166604 | 4.50% | 10432 |
| chr8 | 5148395 | 3.55% | 7691 |
| chr9 | 6066623 | 4.38% | 8305 |
| chr10 | 5958858 | 4.45% | 8615 |
| chr11 | 7102220 | 5.26% | 9530 |
| chr12 | 8301622 | 6.23% | 11340 |
| chr13 | 3053972 | 2.67% | 4713 |
| chr14 | 4988110 | 4.66% | 7211 |
| chr15 | 5472861 | 5.37% | 7814 |
| chr16 | 5612470 | 6.21% | 7211 |
| chr17 | 7847051 | 9.43% | 10573 |
| chr18 | 2865051 | 3.56% | 4194 |
| chr19 | 7739539 | 13.20% | 9877 |
| chr20 | 4130593 | 6.41% | 5372 |
| chr21 | 1613419 | 3.45% | 2167 |
| chr22 | 3439506 | 6.77% | 4311 |
| chrX | 1889020 | 1.21% | 3831 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 201712 | 140 | 17178 | 712.25 | 485 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF459ONH.bed.gz | 3.96 MB | 60f74a59f3f4f96d86f471ca33f5e828 |
| ENCFF459ONH.tabix.bed.gz | 1.9 MB | 3d365084bb61a836d51b90d25c68fb79 |
| ENCFF459ONH.tabix.bed.gz.tbi | 177.99 KB | 5637b52439239f6cddf3a7f8d620355e |
| genomic_resource.yaml | 2.18 KB | 06d4057b760303a7f1d27f74a08521f0 |
| statistics/ |